Table 3 The kappa values of each gene among the 125 supernatant and sediment samples
From: Detection of bladder cancer using urinary cell-free DNA and cellular DNA
Gene | Supernatant sensitivity | Supernatant specificity | Sediment sensitivity | Sediment specificity | p-value | Kappa |
|---|---|---|---|---|---|---|
TERT | 0.46 | 1.00 | 0.48 | 1.00 | 0.90 | 0.86 |
FGFR3 | 0.38 | 0.97 | 0.37 | 0.97 | 1.00 | 0.82 |
TP53 | 0.29 | 1.00 | 0.22 | 0.82 | 0.13 | 0.69 |
PIK3CA | 0.26 | 0.94 | 0.24 | 0.97 | 1.00 | 0.67 |
KRAS | 0.16 | 1.00 | 0.15 | 1.00 | 1.00 | 0.96 |
CDKN2A | 0.10 | 1.00 | 0.10 | 1.00 | 1.00 | 1.00 |
HRAS | 0.10 | 0.97 | 0.14 | 1.00 | 0.60 | 0.76 |
AKT1 | 0.08 | 1.00 | 0.08 | 1.00 | 1.00 | 1.00 |
ERBB2 | 0.07 | 1.00 | 0.07 | 1.00 | 1.00 | 1.00 |
ACTB | 0.04 | 1.00 | 0.00 | 1.00 | 0.67 | 0.00 |
BRAF | 0.03 | 1.00 | 0.03 | 1.00 | 1.00 | 1.00 |
KDM6A | 0.03 | 0.97 | 0.02 | 1.00 | 1.00 | 0.66 |
EGFR | 0.02 | 1.00 | 0.00 | 1.00 | 0.89 | 0.00 |
CTNNB1 | 0.01 | 1.00 | 0.01 | 1.00 | 1.00 | 1.00 |
FBXW7 | 0.01 | 1.00 | 0.01 | 1.00 | 1.00 | 1.00 |
PTEN | 0.01 | 1.00 | 0.01 | 1.00 | 1.00 | 1.00 |
STAG2 | 0.01 | 1.00 | 0.01 | 1.00 | 1.00 | − 0.01 |
CUL1 | 0.01 | 1.00 | 0.00 | 1.00 | 1.00 | 0.00 |
U2AF1 | 0.01 | 0.97 | 0.00 | 1.00 | 1.00 | 0.00 |