Table 4 Resources for miRNA research

miRBase

www.mirbase.org

MiRNA database

[250]

miRTarbase

mirtarbase.mbc.nctu.edu.tw/php/index.php

MiRNA target interaction database

[251]

Tarbase

www.microrna.gr/tarbase (& follow link)

MiRNA target interaction database

[252]

DIANA

diana.imis.athena-iinnovation.gr/DianaTools/

MiRNA research tools

[253]

doRiNA

https://dorina.mdc-berlin.de

Database of RNA interactions

[254]

miRanda

https://omictools.com/miranda-tool

MiRNA target prediction. No longer

[255]

mirBridge

n.a.

MiRNA target prediction

[256]

miRDB

www.mirbd.org

MiRNA target prediction

[257]

miRmap

https://mirmap.ezlab.org

MiRNA target prediction

[258]

miRNAMap

mirnamap.mbc.nctu.edu.tw

MiRNA research tools

[259]

PicTar

https://pictar.mdc-berlin.de

MiRNA target prediction

[260]

PITA

http://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html

MiRNA target prediction

[261]

RegRNA

regrna2.mbc.nctu.edu.tw/

RNA-RNA interaction regions

[262]

rna22

https://cm.jefferson.edu/rna22/

MiRNA target prediction

[263]

RNAhybrid

https://bio.tools/rnahybrid

MiRNA target prediction

[264]

Targetscan

www.targetscan.org

MiRNA target prediction

[77]

miRSystem

mirsystem.cgm.ntu.edu.tw/

Comprehensive analysis

[238]

miRWalk2.0

zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/

Comprehensive analysis

[239]

CORNA

omictools.com/cornas-tool (& follow link)

Integrated analysis

[265]

MMIA

epigenomics.snu.ac.kr/MMIA/public_html/index.html

Integrated analysis

[266]

miARma-seq

http://miarmaseq.idoproteins.com/

Integrated analysis

[241]

DIANA-LncBase

carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=lncbasev2%2Findex

Predicted microRNA targets on lncRNAs

[267]