TY - JOUR AU - Novick, A. AU - Weiner, M. PY - 1957 DA - 1957// TI - Enzyme induction as an all-or-none phenomenon JO - Proc Natl Acad Sci USA VL - 43 UR - https://doi.org/10.1073/pnas.43.7.553 DO - 10.1073/pnas.43.7.553 ID - Novick1957 ER - TY - JOUR AU - Coskun, A. F. AU - Eser, U. AU - Islam, S. PY - 2016 DA - 2016// TI - Cellular identity at the single-cell level JO - Mol Bio Syst VL - 12 ID - Coskun2016 ER - TY - JOUR AU - Bianconi, E. AU - Piovesan, A. AU - Facchin, F. PY - 2013 DA - 2013// TI - An estimation of the number of cells in the human body JO - Ann Hum Biol VL - 40 UR - https://doi.org/10.3109/03014460.2013.807878 DO - 10.3109/03014460.2013.807878 ID - Bianconi2013 ER - TY - JOUR AU - Lindstrom, S. AU - Andersson-Svahn, H. PY - 2010 DA - 2010// TI - Overview of single-cell analyses: microdevices and applications JO - Lab Chip VL - 10 UR - https://doi.org/10.1039/c0lc00150c DO - 10.1039/c0lc00150c ID - Lindstrom2010 ER - TY - JOUR AU - Tang, F. AU - Barbacioru, C. AU - Wang, Y. PY - 2009 DA - 2009// TI - mRNA-Seq whole-transcriptome analysis of a single cell JO - Nat Methods VL - 6 UR - https://doi.org/10.1038/nmeth.1315 DO - 10.1038/nmeth.1315 ID - Tang2009 ER - TY - JOUR AU - Navin, N. AU - Kendall, J. AU - Troge, J. PY - 2011 DA - 2011// TI - Tumour evolution inferred by single-cell sequencing JO - Nature VL - 472 UR - https://doi.org/10.1038/nature09807 DO - 10.1038/nature09807 ID - Navin2011 ER - TY - JOUR AU - Hou, Y. AU - Song, L. AU - Zhu, P. PY - 2012 DA - 2012// TI - Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm JO - Cell VL - 148 UR - https://doi.org/10.1016/j.cell.2012.02.028 DO - 10.1016/j.cell.2012.02.028 ID - Hou2012 ER - TY - JOUR AU - Xu, X. AU - Hou, Y. AU - Yin, X. PY - 2012 DA - 2012// TI - Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor JO - Cell VL - 148 UR - https://doi.org/10.1016/j.cell.2012.02.025 DO - 10.1016/j.cell.2012.02.025 ID - Xu2012 ER - TY - JOUR AU - Nagano, T. AU - Lubling, Y. AU - Stevens, T. J. PY - 2013 DA - 2013// TI - Single-cell Hi-C reveals cell-to-cell variability in chromosome structure JO - Nature VL - 502 UR - https://doi.org/10.1038/nature12593 DO - 10.1038/nature12593 ID - Nagano2013 ER - TY - JOUR AU - Wang, Y. AU - Navin, N. E. PY - 2015 DA - 2015// TI - Advances and applications of single-cell sequencing technologies JO - Mol Cell VL - 58 UR - https://doi.org/10.1016/j.molcel.2015.05.005 DO - 10.1016/j.molcel.2015.05.005 ID - Wang2015 ER - TY - JOUR AU - Navin, N. AU - Hicks, J. PY - 2011 DA - 2011// TI - Future medical applications of single-cell sequencing in cancer JO - Genome Med VL - 3 UR - https://doi.org/10.1186/gm247 DO - 10.1186/gm247 ID - Navin2011 ER - TY - JOUR AU - Navin, N. E. PY - 2014 DA - 2014// TI - Cancer genomics: one cell at a time JO - Genome Biol VL - 15 UR - https://doi.org/10.1186/s13059-014-0452-9 DO - 10.1186/s13059-014-0452-9 ID - Navin2014 ER - TY - STD TI - Zhang D, Wang X (2015) A simple protocol for single lung cancer cell isolation-making the single cell based lung cancer research feasible for individual investigator. In Single cell sequencing and systems immunology. Springer, Berlin ID - ref13 ER - TY - JOUR AU - Brehm-Stecher, B. F. AU - Johnson, E. A. PY - 2004 DA - 2004// TI - Single-cell microbiology: tools, technologies, and applications JO - Microbiol Mol Biol Rev VL - 68 UR - https://doi.org/10.1128/MMBR.68.3.538-559.2004 DO - 10.1128/MMBR.68.3.538-559.2004 ID - Brehm-Stecher2004 ER - TY - JOUR AU - Yilmaz, S. AU - Singh, A. K. PY - 2012 DA - 2012// TI - Single cell genome sequencing JO - Curr Opin Biotechnol VL - 23 UR - https://doi.org/10.1016/j.copbio.2011.11.018 DO - 10.1016/j.copbio.2011.11.018 ID - Yilmaz2012 ER - TY - JOUR AU - Boehmer, L. AU - Liu, C. AU - Ackerman, S. PY - 2016 DA - 2016// TI - Sequencing and cloning of antigen-specific antibodies from mouse memory B cells JO - Nat Protoc VL - 11 UR - https://doi.org/10.1038/nprot.2016.102 DO - 10.1038/nprot.2016.102 ID - Boehmer2016 ER - TY - JOUR AU - Allen, L. Z. AU - Ishoey, T. AU - Novotny, M. A. PY - 2011 DA - 2011// TI - Single virus genomics: a new tool for virus discovery JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0017722 DO - 10.1371/journal.pone.0017722 ID - Allen2011 ER - TY - STD TI - Wang J, Min Z, Jin M, et al (2015) Protocol for single cell isolation by flow cytometry. In Single cell sequencing and systems immunology. Springer, Berlin ID - ref18 ER - TY - JOUR AU - Whitesides, G. M. PY - 2006 DA - 2006// TI - The origins and the future of microfluidics JO - Nature VL - 442 UR - https://doi.org/10.1038/nature05058 DO - 10.1038/nature05058 ID - Whitesides2006 ER - TY - JOUR AU - Gac, S. AU - Nordhoff, V. PY - 2016 DA - 2016// TI - Microfluidics for mammalian embryo culture and selection: where do we stand now? JO - Mol Hum Reprod VL - 27 ID - Gac2016 ER - TY - JOUR AU - Streets, A. M. AU - Zhang, X. AU - Cao, C. PY - 2014 DA - 2014// TI - Microfluidic single-cell whole-transcriptome sequencing JO - Proc Natl Acad Sci USA VL - 111 UR - https://doi.org/10.1073/pnas.1402030111 DO - 10.1073/pnas.1402030111 ID - Streets2014 ER - TY - JOUR AU - Han, L. AU - Zi, X. AU - Garmire, L. X. PY - 2014 DA - 2014// TI - Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform JO - Sci Rep VL - 4 UR - https://doi.org/10.1038/srep06485 DO - 10.1038/srep06485 ID - Han2014 ER - TY - JOUR AU - Wu, A. R. AU - Kawahara, T. L. AU - Rapicavoli, N. A. PY - 2012 DA - 2012// TI - High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation JO - Lab Chip VL - 12 UR - https://doi.org/10.1039/c2lc21290k DO - 10.1039/c2lc21290k ID - Wu2012 ER - TY - JOUR AU - Salafi, T. AU - Zeming, K. K. AU - Zhang, Y. PY - 2016 DA - 2016// TI - Advancements in microfluidics for nanoparticle separation JO - Lab Chip VL - 17 UR - https://doi.org/10.1039/C6LC01045H DO - 10.1039/C6LC01045H ID - Salafi2016 ER - TY - JOUR AU - Zhang, X. AU - Marjani, S. L. AU - Hu, Z. PY - 2016 DA - 2016// TI - Single-cell sequencing for precise cancer research: progress and prospects JO - Cancer Res VL - 76 UR - https://doi.org/10.1158/0008-5472.CAN-15-1907 DO - 10.1158/0008-5472.CAN-15-1907 ID - Zhang2016 ER - TY - JOUR AU - Swennenhuis, J. F. AU - Dalum, G. AU - Zeune, L. L. PY - 2016 DA - 2016// TI - Improving the cell search(R) system JO - Expert Rev Mol Diagn VL - 16 UR - https://doi.org/10.1080/14737159.2016.1255144 DO - 10.1080/14737159.2016.1255144 ID - Swennenhuis2016 ER - TY - JOUR AU - Pantel, K. AU - Alix-Panabieres, C. AU - Riethdorf, S. PY - 2009 DA - 2009// TI - Cancer micrometastases JO - Nat Rev Clin Oncol VL - 6 UR - https://doi.org/10.1038/nrclinonc.2009.44 DO - 10.1038/nrclinonc.2009.44 ID - Pantel2009 ER - TY - JOUR AU - Talasaz, A. H. AU - Powell, A. A. AU - Huber, D. E. PY - 2009 DA - 2009// TI - Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0813188106 DO - 10.1073/pnas.0813188106 ID - Talasaz2009 ER - TY - JOUR AU - Altomare, L. AU - Borgatti, M. AU - Medoro, G. PY - 2003 DA - 2003// TI - Levitation and movement of human tumor cells using a printed circuit board device based on software-controlled dielectrophoresis JO - Biotechnol Bioeng VL - 82 UR - https://doi.org/10.1002/bit.10590 DO - 10.1002/bit.10590 ID - Altomare2003 ER - TY - JOUR AU - Choi, J. H. AU - Ogunniyi, A. O. AU - Du, M. PY - 2010 DA - 2010// TI - Development and optimization of a process for automated recovery of single cells identified by microengraving JO - Biotechnol Prog VL - 26 UR - https://doi.org/10.1002/btpr.374 DO - 10.1002/btpr.374 ID - Choi2010 ER - TY - JOUR AU - Adams, D. L. AU - Adams, D. K. AU - Alpaugh, R. K. PY - 2016 DA - 2016// TI - Circulating cancer-associated macrophage-like cells differentiate malignant breast cancer and benign breast conditions JO - Cancer Epidemiol Biomark Prev VL - 25 UR - https://doi.org/10.1158/1055-9965.EPI-15-1221 DO - 10.1158/1055-9965.EPI-15-1221 ID - Adams2016 ER - TY - JOUR AU - Zhu, W. AU - Zhang, X. Y. AU - Marjani, S. L. PY - 2016 DA - 2016// TI - Next-generation molecular diagnosis: single-cell sequencing from bench to bedside JO - Cell Mol Life Sci VL - 13 ID - Zhu2016 ER - TY - JOUR AU - Zong, C. AU - Lu, S. AU - Chapman, A. R. PY - 2012 DA - 2012// TI - Genome-wide detection of single-nucleotide and copy-number variations of a single human cell JO - Science VL - 338 UR - https://doi.org/10.1126/science.1229164 DO - 10.1126/science.1229164 ID - Zong2012 ER - TY - JOUR AU - Liang, J. AU - Cai, W. AU - Sun, Z. PY - 2014 DA - 2014// TI - Single-cell sequencing technologies: current and future JO - J Genet Genom VL - 41 UR - https://doi.org/10.1016/j.jgg.2014.09.005 DO - 10.1016/j.jgg.2014.09.005 ID - Liang2014 ER - TY - JOUR AU - Loo, P. AU - Voet, T. PY - 2014 DA - 2014// TI - Single cell analysis of cancer genomes JO - Curr Opin Genet Dev VL - 24 UR - https://doi.org/10.1016/j.gde.2013.12.004 DO - 10.1016/j.gde.2013.12.004 ID - Loo2014 ER - TY - JOUR AU - Grun, D. AU - Oudenaarden, A. PY - 2015 DA - 2015// TI - Design and analysis of single-cell sequencing experiments JO - Cell VL - 163 UR - https://doi.org/10.1016/j.cell.2015.10.039 DO - 10.1016/j.cell.2015.10.039 ID - Grun2015 ER - TY - JOUR AU - Telenius, H. AU - Carter, N. P. AU - Bebb, C. E. PY - 1992 DA - 1992// TI - Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer JO - Genomics VL - 13 UR - https://doi.org/10.1016/0888-7543(92)90147-K DO - 10.1016/0888-7543(92)90147-K ID - Telenius1992 ER - TY - JOUR AU - Huang, L. AU - Ma, F. AU - Chapman, A. PY - 2015 DA - 2015// TI - Single-cell whole-genome amplification and sequencing: methodology and applications JO - Annu Rev Genom Hum Genet VL - 16 UR - https://doi.org/10.1146/annurev-genom-090413-025352 DO - 10.1146/annurev-genom-090413-025352 ID - Huang2015 ER - TY - JOUR AU - Arneson, N. AU - Hughes, S. AU - Houlston, R. PY - 2008 DA - 2008// TI - Whole-genome amplification by degenerate oligonucleotide primed PCR (DOP-PCR) JO - CSH Protoc VL - 2008 ID - Arneson2008 ER - TY - JOUR AU - Hou, Y. AU - Wu, K. AU - Shi, X. PY - 2015 DA - 2015// TI - Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing JO - Gigascience VL - 4 UR - https://doi.org/10.1186/s13742-015-0068-3 DO - 10.1186/s13742-015-0068-3 ID - Hou2015 ER - TY - JOUR AU - Baslan, T. AU - Hicks, J. PY - 2014 DA - 2014// TI - Single cell sequencing approaches for complex biological systems JO - Curr Opin Genet Dev VL - 26 UR - https://doi.org/10.1016/j.gde.2014.06.004 DO - 10.1016/j.gde.2014.06.004 ID - Baslan2014 ER - TY - JOUR AU - Zhang, D. Y. AU - Zhang, W. AU - Li, X. PY - 2001 DA - 2001// TI - Detection of rare DNA targets by isothermal ramification amplification JO - Gene VL - 274 UR - https://doi.org/10.1016/S0378-1119(01)00607-2 DO - 10.1016/S0378-1119(01)00607-2 ID - Zhang2001 ER - TY - JOUR AU - Aliotta, J. M. AU - Pelletier, J. J. AU - Ware, J. L. PY - 1996 DA - 1996// TI - Thermostable Bst DNA polymerase I lacks a 3′ –> 5′ proofreading exonuclease activity JO - Genet Anal VL - 12 UR - https://doi.org/10.1016/S1050-3862(96)80005-2 DO - 10.1016/S1050-3862(96)80005-2 ID - Aliotta1996 ER - TY - JOUR AU - Baner, J. AU - Nilsson, M. AU - Mendel-Hartvig, M. PY - 1998 DA - 1998// TI - Signal amplification of padlock probes by rolling circle replication JO - Nucleic Acids Res VL - 26 UR - https://doi.org/10.1093/nar/26.22.5073 DO - 10.1093/nar/26.22.5073 ID - Baner1998 ER - TY - JOUR AU - Dean, F. B. AU - Nelson, J. R. AU - Giesler, T. L. PY - 2001 DA - 2001// TI - Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification JO - Genome Res VL - 11 UR - https://doi.org/10.1101/gr.180501 DO - 10.1101/gr.180501 ID - Dean2001 ER - TY - JOUR AU - Spits, C. AU - Caignec, C. AU - Rycke, M. PY - 2006 DA - 2006// TI - Optimization and evaluation of single-cell whole-genome multiple displacement amplification JO - Hum Mutat VL - 27 UR - https://doi.org/10.1002/humu.20324 DO - 10.1002/humu.20324 ID - Spits2006 ER - TY - JOUR AU - Dean, F. B. AU - Hosono, S. AU - Fang, L. PY - 2002 DA - 2002// TI - Comprehensive human genome amplification using multiple displacement amplification JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.082089499 DO - 10.1073/pnas.082089499 ID - Dean2002 ER - TY - JOUR AU - Lasken, R. S. PY - 2013 DA - 2013// TI - Single-cell sequencing in its prime JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2523 DO - 10.1038/nbt.2523 ID - Lasken2013 ER - TY - JOUR AU - Wang, Y. AU - Waters, J. AU - Leung, M. L. PY - 2014 DA - 2014// TI - Clonal evolution in breast cancer revealed by single nucleus genome sequencing JO - Nature VL - 512 UR - https://doi.org/10.1038/nature13600 DO - 10.1038/nature13600 ID - Wang2014 ER - TY - JOUR AU - Leung, M. L. AU - Wang, Y. AU - Waters, J. PY - 2015 DA - 2015// TI - SNES: single nucleus exome sequencing JO - Genome Biol VL - 16 UR - https://doi.org/10.1186/s13059-015-0616-2 DO - 10.1186/s13059-015-0616-2 ID - Leung2015 ER - TY - JOUR AU - Kurimoto, K. AU - Yabuta, Y. AU - Ohinata, Y. PY - 2006 DA - 2006// TI - An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl050 DO - 10.1093/nar/gkl050 ID - Kurimoto2006 ER - TY - JOUR AU - Iscove, N. N. AU - Barbara, M. AU - Gu, M. PY - 2002 DA - 2002// TI - Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA JO - Nat Biotechnol VL - 20 UR - https://doi.org/10.1038/nbt729 DO - 10.1038/nbt729 ID - Iscove2002 ER - TY - JOUR AU - Tang, F. AU - Barbacioru, C. AU - Nordman, E. PY - 2010 DA - 2010// TI - RNA-Seq analysis to capture the transcriptome landscape of a single cell JO - Nat Protoc VL - 5 UR - https://doi.org/10.1038/nprot.2009.236 DO - 10.1038/nprot.2009.236 ID - Tang2010 ER - TY - JOUR AU - Ramskold, D. AU - Luo, S. AU - Wang, Y. C. PY - 2012 DA - 2012// TI - Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells JO - Nat Biotechnol VL - 30 UR - https://doi.org/10.1038/nbt.2282 DO - 10.1038/nbt.2282 ID - Ramskold2012 ER - TY - JOUR AU - Zhu, Y. Y. AU - Machleder, E. M. AU - Chenchik, A. PY - 2001 DA - 2001// TI - Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction JO - Biotechniques VL - 30 ID - Zhu2001 ER - TY - JOUR AU - Goetz, J. J. AU - Trimarchi, J. M. PY - 2012 DA - 2012// TI - Transcriptome sequencing of single cells with Smart-Seq JO - Nat Biotechnol VL - 30 UR - https://doi.org/10.1038/nbt.2325 DO - 10.1038/nbt.2325 ID - Goetz2012 ER - TY - JOUR AU - Picelli, S. AU - Bjorklund, A. K. AU - Faridani, O. R. PY - 2013 DA - 2013// TI - Smart-seq2 for sensitive full-length transcriptome profiling in single cells JO - Nat Methods VL - 10 UR - https://doi.org/10.1038/nmeth.2639 DO - 10.1038/nmeth.2639 ID - Picelli2013 ER - TY - JOUR AU - Islam, S. AU - Kjallquist, U. AU - Moliner, A. PY - 2011 DA - 2011// TI - Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.110882.110 DO - 10.1101/gr.110882.110 ID - Islam2011 ER - TY - JOUR AU - Hashimshony, T. AU - Wagner, F. AU - Sher, N. PY - 2012 DA - 2012// TI - CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification JO - Cell Rep VL - 2 UR - https://doi.org/10.1016/j.celrep.2012.08.003 DO - 10.1016/j.celrep.2012.08.003 ID - Hashimshony2012 ER - TY - JOUR AU - Shapiro, E. AU - Biezuner, T. AU - Linnarsson, S. PY - 2013 DA - 2013// TI - Single-cell sequencing-based technologies will revolutionize whole-organism science JO - Nat Rev Genet VL - 14 UR - https://doi.org/10.1038/nrg3542 DO - 10.1038/nrg3542 ID - Shapiro2013 ER - TY - JOUR AU - Islam, S. AU - Zeisel, A. AU - Joost, S. PY - 2014 DA - 2014// TI - Quantitative single-cell RNA-seq with unique molecular identifiers JO - Nat Methods VL - 11 UR - https://doi.org/10.1038/nmeth.2772 DO - 10.1038/nmeth.2772 ID - Islam2014 ER - TY - JOUR AU - Macosko, E. Z. AU - Basu, A. AU - Satija, R. PY - 2015 DA - 2015// TI - Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets JO - Cell VL - 161 UR - https://doi.org/10.1016/j.cell.2015.05.002 DO - 10.1016/j.cell.2015.05.002 ID - Macosko2015 ER - TY - JOUR AU - Klein, A. M. AU - Mazutis, L. AU - Akartuna, I. PY - 2015 DA - 2015// TI - Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells JO - Cell VL - 161 UR - https://doi.org/10.1016/j.cell.2015.04.044 DO - 10.1016/j.cell.2015.04.044 ID - Klein2015 ER - TY - JOUR AU - Eisenstein, M. PY - 2015 DA - 2015// TI - Startups use short-read data to expand long-read sequencing market JO - Nat Biotechnol VL - 33 UR - https://doi.org/10.1038/nbt0515-433 DO - 10.1038/nbt0515-433 ID - Eisenstein2015 ER - TY - JOUR AU - Coombe, L. AU - Warren, R. L. AU - Jackman, S. D. PY - 2016 DA - 2016// TI - Assembly of the complete Sitka Spruce chloroplast genome using 10× genomics’ GemCode sequencing data JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0163059 DO - 10.1371/journal.pone.0163059 ID - Coombe2016 ER - TY - JOUR AU - Zheng, G. X. AU - Terry, J. M. AU - Belgrader, P. PY - 2017 DA - 2017// TI - Massively parallel digital transcriptional profiling of single cells JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/ncomms14049 DO - 10.1038/ncomms14049 ID - Zheng2017 ER - TY - JOUR AU - Goldberg, A. D. AU - Allis, C. D. AU - Bernstein, E. PY - 2007 DA - 2007// TI - Epigenetics: a landscape takes shape JO - Cell VL - 128 UR - https://doi.org/10.1016/j.cell.2007.02.006 DO - 10.1016/j.cell.2007.02.006 ID - Goldberg2007 ER - TY - JOUR AU - Guo, H. AU - Zhu, P. AU - Guo, F. PY - 2015 DA - 2015// TI - Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing JO - Nat Protoc VL - 10 UR - https://doi.org/10.1038/nprot.2015.039 DO - 10.1038/nprot.2015.039 ID - Guo2015 ER - TY - JOUR AU - Guo, H. AU - Zhu, P. AU - Wu, X. PY - 2013 DA - 2013// TI - Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing JO - Genome Res VL - 23 UR - https://doi.org/10.1101/gr.161679.113 DO - 10.1101/gr.161679.113 ID - Guo2013 ER - TY - JOUR AU - Smallwood, S. A. AU - Lee, H. J. AU - Angermueller, C. PY - 2014 DA - 2014// TI - Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity JO - Nat Methods VL - 11 UR - https://doi.org/10.1038/nmeth.3035 DO - 10.1038/nmeth.3035 ID - Smallwood2014 ER - TY - JOUR AU - Rotem, A. AU - Ram, O. AU - Shoresh, N. PY - 2015 DA - 2015// TI - Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state JO - Nat Biotechnol VL - 33 UR - https://doi.org/10.1038/nbt.3383 DO - 10.1038/nbt.3383 ID - Rotem2015 ER - TY - JOUR AU - Cipriany, B. R. AU - Zhao, R. AU - Murphy, P. J. PY - 2010 DA - 2010// TI - Single molecule epigenetic analysis in a nanofluidic channel JO - Anal Chem VL - 82 UR - https://doi.org/10.1021/ac9028642 DO - 10.1021/ac9028642 ID - Cipriany2010 ER - TY - JOUR AU - Park, S. Y. AU - Gonen, M. AU - Kim, H. J. PY - 2010 DA - 2010// TI - Cellular and genetic diversity in the progression of in situ human breast carcinomas to an invasive phenotype JO - J Clin Invest VL - 120 UR - https://doi.org/10.1172/JCI40724 DO - 10.1172/JCI40724 ID - Park2010 ER - TY - JOUR AU - Eirew, P. AU - Steif, A. AU - Khattra, J. PY - 2015 DA - 2015// TI - Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution JO - Nature VL - 518 UR - https://doi.org/10.1038/nature13952 DO - 10.1038/nature13952 ID - Eirew2015 ER - TY - JOUR AU - Kim, K. T. AU - Lee, H. W. AU - Lee, H. O. PY - 2015 DA - 2015// TI - Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells JO - Genome Biol VL - 16 UR - https://doi.org/10.1186/s13059-015-0692-3 DO - 10.1186/s13059-015-0692-3 ID - Kim2015 ER - TY - JOUR AU - Tirosh, I. AU - Venteicher, A. S. AU - Hebert, C. PY - 2016 DA - 2016// TI - Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma JO - Nature VL - 539 UR - https://doi.org/10.1038/nature20123 DO - 10.1038/nature20123 ID - Tirosh2016 ER - TY - JOUR AU - Yu, C. AU - Yu, J. AU - Yao, X. PY - 2014 DA - 2014// TI - Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing JO - Cell Res VL - 24 UR - https://doi.org/10.1038/cr.2014.43 DO - 10.1038/cr.2014.43 ID - Yu2014 ER - TY - JOUR AU - Li, Y. AU - Xu, X. AU - Song, L. PY - 2012 DA - 2012// TI - Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer JO - Gigascience VL - 1 UR - https://doi.org/10.1186/2047-217X-1-12 DO - 10.1186/2047-217X-1-12 ID - Li2012 ER - TY - JOUR AU - Hughes, A. E. AU - Magrini, V. AU - Demeter, R. PY - 2014 DA - 2014// TI - Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing JO - PLoS Genet VL - 10 UR - https://doi.org/10.1371/journal.pgen.1004462 DO - 10.1371/journal.pgen.1004462 ID - Hughes2014 ER - TY - JOUR AU - Paguirigan, A. L. AU - Smith, J. AU - Meshinchi, S. PY - 2015 DA - 2015// TI - Single-cell genotyping demonstrates complex clonal diversity in acute myeloid leukemia JO - Sci Transl Med VL - 7 UR - https://doi.org/10.1126/scitranslmed.aaa0763 DO - 10.1126/scitranslmed.aaa0763 ID - Paguirigan2015 ER - TY - JOUR AU - Gerber, T. AU - Willscher, E. AU - Loeffler-Wirth, H. PY - 2016 DA - 2016// TI - Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq JO - Oncotarget VL - 26 ID - Gerber2016 ER - TY - JOUR AU - Ni, X. AU - Zhuo, M. AU - Su, Z. PY - 2013 DA - 2013// TI - Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients JO - Proc Natl Acad Sci USA VL - 110 UR - https://doi.org/10.1073/pnas.1320659110 DO - 10.1073/pnas.1320659110 ID - Ni2013 ER - TY - JOUR AU - Lohr, J. G. AU - Adalsteinsson, V. A. AU - Cibulskis, K. PY - 2014 DA - 2014// TI - Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer JO - Nat Biotechnol VL - 32 UR - https://doi.org/10.1038/nbt.2892 DO - 10.1038/nbt.2892 ID - Lohr2014 ER - TY - JOUR AU - Jiang, R. AU - Lu, Y. T. AU - Ho, H. PY - 2015 DA - 2015// TI - A comparison of isolated circulating tumor cells and tissue biopsies using whole-genome sequencing in prostate cancer JO - Oncotarget VL - 6 ID - Jiang2015 ER - TY - JOUR AU - Polzer, B. AU - Medoro, G. AU - Pasch, S. PY - 2014 DA - 2014// TI - Molecular profiling of single circulating tumor cells with diagnostic intention JO - EMBO Mol Med VL - 6 UR - https://doi.org/10.15252/emmm.201404033 DO - 10.15252/emmm.201404033 ID - Polzer2014 ER - TY - JOUR AU - Court, C. M. AU - Ankeny, J. S. AU - Sho, S. PY - 2016 DA - 2016// TI - Reality of single circulating tumor cell sequencing for molecular diagnostics in pancreatic cancer JO - J Mol Diagn VL - 18 UR - https://doi.org/10.1016/j.jmoldx.2016.03.006 DO - 10.1016/j.jmoldx.2016.03.006 ID - Court2016 ER - TY - JOUR AU - Lohr, J. G. AU - Kim, S. AU - Gould, J. PY - 2016 DA - 2016// TI - Genetic interrogation of circulating multiple myeloma cells at single-cell resolution JO - Sci Transl Med VL - 8 UR - https://doi.org/10.1126/scitranslmed.aac7037 DO - 10.1126/scitranslmed.aac7037 ID - Lohr2016 ER - TY - JOUR AU - Miyamoto, D. T. AU - Zheng, Y. AU - Wittner, B. S. PY - 2015 DA - 2015// TI - RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance JO - Science VL - 349 UR - https://doi.org/10.1126/science.aab0917 DO - 10.1126/science.aab0917 ID - Miyamoto2015 ER - TY - JOUR AU - Proserpio, V. AU - Mahata, B. PY - 2016 DA - 2016// TI - Single-cell technologies to study the immune system JO - Immunology VL - 147 UR - https://doi.org/10.1111/imm.12553 DO - 10.1111/imm.12553 ID - Proserpio2016 ER - TY - JOUR AU - Mahata, B. AU - Zhang, X. AU - Kolodziejczyk, A. A. PY - 2014 DA - 2014// TI - Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis JO - Cell Rep VL - 7 UR - https://doi.org/10.1016/j.celrep.2014.04.011 DO - 10.1016/j.celrep.2014.04.011 ID - Mahata2014 ER - TY - JOUR AU - Douek, D. C. AU - Betts, M. R. AU - Brenchley, J. M. PY - 2002 DA - 2002// TI - A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape JO - J Immunol VL - 168 UR - https://doi.org/10.4049/jimmunol.168.6.3099 DO - 10.4049/jimmunol.168.6.3099 ID - Douek2002 ER - TY - JOUR AU - Han, A. AU - Glanville, J. AU - Hansmann, L. PY - 2014 DA - 2014// TI - Linking T-cell receptor sequence to functional phenotype at the single-cell level JO - Nat Biotechnol VL - 32 UR - https://doi.org/10.1038/nbt.2938 DO - 10.1038/nbt.2938 ID - Han2014 ER - TY - JOUR AU - Shalek, A. K. AU - Satija, R. AU - Adiconis, X. PY - 2013 DA - 2013// TI - Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells JO - Nature VL - 498 UR - https://doi.org/10.1038/nature12172 DO - 10.1038/nature12172 ID - Shalek2013 ER - TY - JOUR AU - Shalek, A. K. AU - Satija, R. AU - Shuga, J. PY - 2014 DA - 2014// TI - Single-cell RNA-seq reveals dynamic paracrine control of cellular variation JO - Nature VL - 510 ID - Shalek2014 ER - TY - JOUR AU - Lasken, R. S. AU - McLean, J. S. PY - 2014 DA - 2014// TI - Recent advances in genomic DNA sequencing of microbial species from single cells JO - Nat Rev Genet VL - 15 UR - https://doi.org/10.1038/nrg3785 DO - 10.1038/nrg3785 ID - Lasken2014 ER - TY - JOUR AU - Podar, M. AU - Abulencia, C. B. AU - Walcher, M. PY - 2007 DA - 2007// TI - Targeted access to the genomes of low-abundance organisms in complex microbial communities JO - Appl Environ Microbiol VL - 73 UR - https://doi.org/10.1128/AEM.02985-06 DO - 10.1128/AEM.02985-06 ID - Podar2007 ER - TY - JOUR AU - Marcy, Y. AU - Ouverney, C. AU - Bik, E. M. PY - 2007 DA - 2007// TI - Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0704662104 DO - 10.1073/pnas.0704662104 ID - Marcy2007 ER - TY - JOUR AU - Youssef, N. H. AU - Blainey, P. C. AU - Quake, S. R. PY - 2011 DA - 2011// TI - Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma) JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.06059-11 DO - 10.1128/AEM.06059-11 ID - Youssef2011 ER - TY - JOUR AU - Campbell, J. H. AU - O’Donoghue, P. AU - Campbell, A. G. PY - 2013 DA - 2013// TI - UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota JO - Proc Natl Acad Sci USA VL - 110 UR - https://doi.org/10.1073/pnas.1303090110 DO - 10.1073/pnas.1303090110 ID - Campbell2013 ER - TY - JOUR AU - McLean, J. S. AU - Lombardo, M. J. AU - Badger, J. H. PY - 2013 DA - 2013// TI - Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum JO - Proc Natl Acad Sci USA VL - 110 UR - https://doi.org/10.1073/pnas.1219809110 DO - 10.1073/pnas.1219809110 ID - McLean2013 ER - TY - JOUR AU - Dodsworth, J. A. AU - Blainey, P. C. AU - Murugapiran, S. K. PY - 1854 DA - 1854// TI - Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage JO - Nat Commun VL - 2013 ID - Dodsworth1854 ER - TY - JOUR AU - Mussmann, M. AU - Hu, F. Z. AU - Richter, M. PY - 2007 DA - 2007// TI - Insights into the genome of large sulfur bacteria revealed by analysis of single filaments JO - PLoS Biol VL - 5 UR - https://doi.org/10.1371/journal.pbio.0050230 DO - 10.1371/journal.pbio.0050230 ID - Mussmann2007 ER - TY - JOUR AU - Mason, O. U. AU - Hazen, T. C. AU - Borglin, S. PY - 2012 DA - 2012// TI - Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to deepwater horizon oil spill JO - ISME J VL - 6 UR - https://doi.org/10.1038/ismej.2012.59 DO - 10.1038/ismej.2012.59 ID - Mason2012 ER - TY - JOUR AU - Wells, D. AU - Kaur, K. AU - Grifo, J. PY - 2014 DA - 2014// TI - Clinical utilisation of a rapid low-pass whole genome sequencing technique for the diagnosis of aneuploidy in human embryos prior to implantation JO - J Med Genet VL - 51 UR - https://doi.org/10.1136/jmedgenet-2014-102497 DO - 10.1136/jmedgenet-2014-102497 ID - Wells2014 ER - TY - JOUR AU - Fiorentino, F. AU - Biricik, A. AU - Bono, S. PY - 2014 DA - 2014// TI - Development and validation of a next-generation sequencing-based protocol for 24-chromosome aneuploidy screening of embryos JO - Fertil Steril VL - 101 UR - https://doi.org/10.1016/j.fertnstert.2014.01.051 DO - 10.1016/j.fertnstert.2014.01.051 ID - Fiorentino2014 ER - TY - JOUR AU - Fiorentino, F. AU - Bono, S. AU - Biricik, A. PY - 2014 DA - 2014// TI - Application of next-generation sequencing technology for comprehensive aneuploidy screening of blastocysts in clinical preimplantation genetic screening cycles JO - Hum Reprod VL - 29 UR - https://doi.org/10.1093/humrep/deu277 DO - 10.1093/humrep/deu277 ID - Fiorentino2014 ER - TY - JOUR AU - Vera-Rodriguez, M. AU - Michel, C. E. AU - Mercader, A. PY - 2016 DA - 2016// TI - Distribution patterns of segmental aneuploidies in human blastocysts identified by next-generation sequencing JO - Fertil Steril VL - 105 UR - https://doi.org/10.1016/j.fertnstert.2015.12.022 DO - 10.1016/j.fertnstert.2015.12.022 ID - Vera-Rodriguez2016 ER - TY - JOUR AU - Lu, S. AU - Zong, C. AU - Fan, W. PY - 2012 DA - 2012// TI - Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing JO - Science VL - 338 UR - https://doi.org/10.1126/science.1229112 DO - 10.1126/science.1229112 ID - Lu2012 ER - TY - JOUR AU - Hou, Y. AU - Fan, W. AU - Yan, L. PY - 2013 DA - 2013// TI - Genome analyses of single human oocytes JO - Cell VL - 155 UR - https://doi.org/10.1016/j.cell.2013.11.040 DO - 10.1016/j.cell.2013.11.040 ID - Hou2013 ER - TY - JOUR AU - Zhang, C. AU - Zhang, C. AU - Chen, S. PY - 2013 DA - 2013// TI - A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0054236 DO - 10.1371/journal.pone.0054236 ID - Zhang2013 ER - TY - JOUR AU - Hua, R. AU - Barrett, A. N. AU - Tan, T. Z. PY - 2015 DA - 2015// TI - Detection of aneuploidy from single fetal nucleated red blood cells using whole genome sequencing JO - Prenat Diagn VL - 35 UR - https://doi.org/10.1002/pd.4491 DO - 10.1002/pd.4491 ID - Hua2015 ER - TY - JOUR AU - Poulin, J. F. AU - Tasic, B. AU - Hjerling-Leffler, J. PY - 2016 DA - 2016// TI - Disentangling neural cell diversity using single-cell transcriptomics JO - Nat Neurosci VL - 19 UR - https://doi.org/10.1038/nn.4366 DO - 10.1038/nn.4366 ID - Poulin2016 ER - TY - JOUR AU - Okaty, B. W. AU - Freret, M. E. AU - Rood, B. D. PY - 2015 DA - 2015// TI - Multi-scale molecular deconstruction of the serotonin neuron system JO - Neuron VL - 88 UR - https://doi.org/10.1016/j.neuron.2015.10.007 DO - 10.1016/j.neuron.2015.10.007 ID - Okaty2015 ER - TY - JOUR AU - Zeisel, A. AU - Munoz-Manchado, A. B. AU - Codeluppi, S. PY - 2015 DA - 2015// TI - Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq JO - Science VL - 347 UR - https://doi.org/10.1126/science.aaa1934 DO - 10.1126/science.aaa1934 ID - Zeisel2015 ER - TY - JOUR AU - Tasic, B. AU - Menon, V. AU - Nguyen, T. N. PY - 2016 DA - 2016// TI - Adult mouse cortical cell taxonomy revealed by single cell transcriptomics JO - Nat Neurosci VL - 19 UR - https://doi.org/10.1038/nn.4216 DO - 10.1038/nn.4216 ID - Tasic2016 ER - TY - JOUR AU - Johnson, M. B. AU - Walsh, C. A. PY - 2016 DA - 2016// TI - Cerebral cortical neuron diversity and development at single-cell resolution JO - Curr Opin Neurobiol VL - 42 UR - https://doi.org/10.1016/j.conb.2016.11.001 DO - 10.1016/j.conb.2016.11.001 ID - Johnson2016 ER - TY - JOUR AU - Darmanis, S. AU - Sloan, S. A. AU - Zhang, Y. PY - 2015 DA - 2015// TI - A survey of human brain transcriptome diversity at the single cell level JO - Proc Natl Acad Sci USA VL - 112 UR - https://doi.org/10.1073/pnas.1507125112 DO - 10.1073/pnas.1507125112 ID - Darmanis2015 ER - TY - JOUR AU - Lake, B. B. AU - Ai, R. AU - Kaeser, G. E. PY - 2016 DA - 2016// TI - Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain JO - Science VL - 352 UR - https://doi.org/10.1126/science.aaf1204 DO - 10.1126/science.aaf1204 ID - Lake2016 ER - TY - JOUR AU - McConnell, M. J. AU - Lindberg, M. R. AU - Brennand, K. J. PY - 2013 DA - 2013// TI - Mosaic copy number variation in human neurons JO - Science VL - 342 UR - https://doi.org/10.1126/science.1243472 DO - 10.1126/science.1243472 ID - McConnell2013 ER - TY - JOUR AU - Cai, X. AU - Evrony, G. D. AU - Lehmann, H. S. PY - 2014 DA - 2014// TI - Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain JO - Cell Rep VL - 8 UR - https://doi.org/10.1016/j.celrep.2014.07.043 DO - 10.1016/j.celrep.2014.07.043 ID - Cai2014 ER -