TY - JOUR AU - Lopez, E. AU - Wesselink, J. J. AU - Lopez, I. AU - Mendieta, J. AU - Gomez-Puertas, P. AU - Rodriguez-Muno, S. PY - 2011 DA - 2011// TI - Technical Phosphoproteomic and Bioinformatic Tools useful in Cancer Research JO - J Clin Bioinforma VL - 1 UR - https://doi.org/10.1186/2043-9113-1-26 DO - 10.1186/2043-9113-1-26 ID - Lopez2011 ER - TY - JOUR AU - Dengjel, J. AU - Akimov, V. AU - Olsen, J. V. AU - Bunkenborg, J. AU - Mann, M. AU - Blagoev, B. AU - Andersen, J. S. PY - 2007 DA - 2007// TI - Quantitative proteomic assessment of very early cellular signalling events JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt1301 DO - 10.1038/nbt1301 ID - Dengjel2007 ER - TY - JOUR AU - Kruger, M. AU - Kratchmarova, I. AU - Blagoev, B. AU - Tseng, Y. H. AU - Kahn, C. R. AU - Mann, M. PY - 2008 DA - 2008// TI - Dissection of the insulin signalling pathway via quantitative phosphoproteomics JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0711713105 DO - 10.1073/pnas.0711713105 ID - Kruger2008 ER - TY - JOUR AU - Pan, C. AU - Olsen, J. V. AU - Daub, H. AU - Mann, M. PY - 2009 DA - 2009// TI - Global effects of kinase inhibitors on signalling networks revealed by quantitative phosphoproteomics JO - Mol Cell Proteomics VL - 8 UR - https://doi.org/10.1074/mcp.M900285-MCP200 DO - 10.1074/mcp.M900285-MCP200 ID - Pan2009 ER - TY - JOUR AU - Daub, H. AU - Olsen, J. V. AU - Bairlein, M. AU - Gnad, F. AU - Oppermann, F. S. AU - Korner, R. AU - Greff, Z. AU - Keri, G. AU - Stemmann, O. AU - Mann, M. PY - 2008 DA - 2008// TI - Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle JO - Mol Cell VL - 31 UR - https://doi.org/10.1016/j.molcel.2008.07.007 DO - 10.1016/j.molcel.2008.07.007 ID - Daub2008 ER - TY - JOUR AU - Mertins, P. AU - Eberl, H. C. AU - Renkawitz, J. AU - Olsen, J. V. AU - Tremblay, M. L. AU - Mann, M. AU - Ullrich, A. AU - Daub, H. PY - 2008 DA - 2008// TI - Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics JO - Mol Cell Proteomics VL - 7 UR - https://doi.org/10.1074/mcp.M800196-MCP200 DO - 10.1074/mcp.M800196-MCP200 ID - Mertins2008 ER - TY - JOUR AU - Hilger, M. AU - Bonaldi, T. AU - Gnad, F. AU - Mann, M. PY - 2009 DA - 2009// TI - Systems-wide analysis of a phosphatase knock down by quantitative proteomics and phosphoproteomics JO - Mol Cell Proteomics VL - 8 UR - https://doi.org/10.1074/mcp.M800559-MCP200 DO - 10.1074/mcp.M800559-MCP200 ID - Hilger2009 ER - TY - JOUR AU - Dolado, I. AU - Nebreda, A. R. PY - 2008 DA - 2008// TI - AKT and oxidative stress team up to kill cancer cells JO - Cancer Cell VL - 14 UR - https://doi.org/10.1016/j.ccr.2008.11.006 DO - 10.1016/j.ccr.2008.11.006 ID - Dolado2008 ER - TY - JOUR AU - Malumbres, M. AU - Barbacid, M. PY - 2001 DA - 2001// TI - To cycle or not to cycle: a critical decision in cancer JO - Nat Rev Cancer VL - 1 UR - https://doi.org/10.1038/35106065 DO - 10.1038/35106065 ID - Malumbres2001 ER - TY - JOUR AU - Swat, A. AU - Dolado, I. AU - Rojas, J. M. AU - Nebreda, A. R. PY - 2009 DA - 2009// TI - Cell density-dependent inhibition of epidermal growth factor receptor signalling by p38alpha mitogenactivated protein kinase via Sprouty2 downregulation JO - Mol Cell Biol VL - 29 UR - https://doi.org/10.1128/MCB.01955-08 DO - 10.1128/MCB.01955-08 ID - Swat2009 ER - TY - JOUR AU - Ventura, J. J. AU - Tenbaum, S. AU - Perdiguero, E. AU - Huth, M. AU - Guerra, C. AU - Barbacid, M. AU - Pasparakis, M. AU - Nebreda, A. R. PY - 2007 DA - 2007// TI - p38alpha MAP kinase is essential in lung stem and progenitor cell proliferation and differentiation JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng2037 DO - 10.1038/ng2037 ID - Ventura2007 ER - TY - JOUR AU - Hulit, J. AU - Suyama, K. AU - Chung, S. AU - Keren, R. AU - Agiostratidou, G. AU - Shan, W. AU - Dong, X. AU - Williams, T. M. AU - Lisanti, M. P. AU - Knudsen, K. AU - Hazan, R. B. PY - 2007 DA - 2007// TI - N-cadherin signalling potentiates mammary tumor metastasis via enhanced extracellular signal-regulated kinase activation JO - Cancer Res VL - 67 UR - https://doi.org/10.1158/0008-5472.CAN-06-3401 DO - 10.1158/0008-5472.CAN-06-3401 ID - Hulit2007 ER - TY - JOUR AU - Chen, L. L. AU - Ji, Y. AU - Xu, J. F. AU - Lu, S. H. AU - Hou, Y. Y. AU - Hou, J. AU - Sujie, A. AU - Zeng, H. Y. AU - Tan, Y. S. PY - 2011 DA - 2011// TI - Focal nodular hyperplasia of liver: a clinicopathologic study of 238 patients JO - Zhonghua Bing Li Xue Za Zhi VL - 40 ID - Chen2011 ER - TY - JOUR AU - Moro, L. AU - Arbini, A. A. AU - Marra, E. AU - Greco, M. PY - 2007 DA - 2007// TI - Constitutive activation of MAPK/ERK inhibits prostate cancer cell proliferation through upregulation of BRCA2 JO - Int J Oncol VL - 30 ID - Moro2007 ER - TY - JOUR AU - Zebisch, A. AU - Czernilofsky, A. P. AU - Keri, G. AU - Smigelskaite, J. AU - Sill, H. AU - Troppmair, J. PY - 2007 DA - 2007// TI - Signalling through RAS-RAF-MEK-ERK: from basics to bedside JO - Curr Med Chem VL - 14 UR - https://doi.org/10.2174/092986707780059670 DO - 10.2174/092986707780059670 ID - Zebisch2007 ER - TY - JOUR AU - Matsuura, K. AU - Nohno, Y. AU - Hijiya, N. AU - Uchida, T. AU - Tsukamoto, Y. AU - Moriyama, M. PY - 2006 DA - 2006// TI - Extracellular signal-regulated protein kinase is activated in cervical intraepithelial neoplasms but inactivated in invasive cervical carcinoma JO - Pathol Int VL - 56 UR - https://doi.org/10.1111/j.1440-1827.2006.01973.x DO - 10.1111/j.1440-1827.2006.01973.x ID - Matsuura2006 ER - TY - JOUR AU - Gerke, V. AU - Moss, S. E. PY - 2002 DA - 2002// TI - Annexins: from structure to function JO - Physiol Rev VL - 82 UR - https://doi.org/10.1152/physrev.00030.2001 DO - 10.1152/physrev.00030.2001 ID - Gerke2002 ER - TY - JOUR AU - Alldridge, L. C. AU - Harris, H. J. AU - Plevin, R. AU - Hannon, R. AU - Bryant, C. E. PY - 1999 DA - 1999// TI - The annexin protein lipocortin 1 regulates the MAPK/ERK pathway JO - J Biol Chem VL - 274 UR - https://doi.org/10.1074/jbc.274.53.37620 DO - 10.1074/jbc.274.53.37620 ID - Alldridge1999 ER - TY - JOUR AU - Sudo, T. AU - Hidaka, H. PY - 1998 DA - 1998// TI - Regulation of calcyclin (S100A6) binding by alternative splicing in the N-terminal regulatory domain of annexin XI isoforms JO - J Biol Chem VL - 273 UR - https://doi.org/10.1074/jbc.273.11.6351 DO - 10.1074/jbc.273.11.6351 ID - Sudo1998 ER - TY - JOUR AU - Araki, R. AU - Fukumura, R. AU - Fujimori, A. AU - Taya, Y. AU - Shiloh, Y. AU - Kurimasa, A. AU - Burma, S. AU - Li, G. C. AU - Chen, D. J. AU - Sato, K. AU - Hoki, Y. AU - Tatsumi, K. AU - Abe, M. PY - 1999 DA - 1999// TI - Enhanced phosphorylation of p53 serine 18 following DNA damage in DNAdependent protein kinase catalytic subunit-deficient cells JO - Cancer Res VL - 59 ID - Araki1999 ER - TY - JOUR AU - McLachlin, D. T. AU - Chait, B. T. PY - 2001 DA - 2001// TI - Analysis of phosphorylated proteins and peptides by mass spectrometry JO - Curr Opin Chem Biol VL - 5 UR - https://doi.org/10.1016/S1367-5931(00)00250-7 DO - 10.1016/S1367-5931(00)00250-7 ID - McLachlin2001 ER - TY - JOUR AU - Ficarro, S. B. AU - McCleland, M. L. AU - Stukenberg, P. T. AU - Burke, D. J. AU - Ross, M. M. AU - Shabanowitz, J. AU - Hunt, D. F. AU - White, F. M. PY - 2002 DA - 2002// TI - Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae JO - Nat Biotechnol VL - 20 UR - https://doi.org/10.1038/nbt0302-301 DO - 10.1038/nbt0302-301 ID - Ficarro2002 ER - TY - JOUR AU - Gruhler, A. AU - Olsen, J. V. AU - Mohammed, S. AU - Mortensen, P. AU - Faergeman, N. J. AU - Mann, M. AU - Jensen, O. N. PY - 2005 DA - 2005// TI - Quantitative phosphoproteomics applied to the yeast pheromone signalling pathway JO - Mol Cell Proteomics VL - 4 UR - https://doi.org/10.1074/mcp.M400219-MCP200 DO - 10.1074/mcp.M400219-MCP200 ID - Gruhler2005 ER - TY - JOUR AU - Pandey, A. AU - Fernandez, M. M. AU - Steen, H. AU - Blagoev, B. AU - Nielsen, M. M. AU - Roche, S. AU - Mann, M. AU - Lodish, H. F. PY - 2000 DA - 2000// TI - Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signalling pathways JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.M007849200 DO - 10.1074/jbc.M007849200 ID - Pandey2000 ER - TY - JOUR AU - Mann, M. AU - Ong, S. E. AU - Gronborg, M. AU - Steen, H. AU - Jensen, O. N. AU - Pandey, A. PY - 2002 DA - 2002// TI - Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome JO - Trends Biotechnol VL - 20 UR - https://doi.org/10.1016/S0167-7799(02)01944-3 DO - 10.1016/S0167-7799(02)01944-3 ID - Mann2002 ER - TY - JOUR AU - Larsen, M. R. AU - Thingholm, T. E. AU - Jensen, O. N. AU - Roepstorff, P. AU - Jorgensen, T. J. PY - 2005 DA - 2005// TI - Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns JO - Mol Cell Proteomics VL - 4 UR - https://doi.org/10.1074/mcp.T500007-MCP200 DO - 10.1074/mcp.T500007-MCP200 ID - Larsen2005 ER - TY - JOUR AU - Larsen, M. R. AU - Cordwell, S. J. AU - Roepstorff, P. PY - 2002 DA - 2002// TI - Graphite powder as an alternative or supplement to reversed-phase material for desalting and concentration of peptide mixtures prior to matrix-assisted laser desorption/ionization-mass spectrometry JO - Proteomics VL - 2 UR - https://doi.org/3.0.CO;2-P DO - 3.0.CO;2-P ID - Larsen2002 ER - TY - JOUR AU - Speicher, K. AU - Kolbas, O. AU - Harper, S. AU - Speicher, D. W. PY - 2000 DA - 2000// TI - Systemic analysis of peptide recoveries from in gel digestion for protein identifications in proteome studies JO - J Biomol Tech VL - 11 ID - Speicher2000 ER - TY - JOUR AU - Martin, H. AU - Flandez, M. AU - Nombela, C. AU - Molina, M. PY - 2005 DA - 2005// TI - Protein phosphatases in MAPK signalling: we keep learning from yeast JO - Mol Microbiol VL - 58 UR - https://doi.org/10.1111/j.1365-2958.2005.04822.x DO - 10.1111/j.1365-2958.2005.04822.x ID - Martin2005 ER - TY - JOUR AU - Biemann, K. PY - 1988 DA - 1988// TI - Contributions of mass spectrometry to peptide and protein structure JO - Biomed Environ Mass Spectrom VL - 16 UR - https://doi.org/10.1002/bms.1200160119 DO - 10.1002/bms.1200160119 ID - Biemann1988 ER - TY - JOUR AU - Roepstorff, P. AU - Fohlman, J. PY - 1984 DA - 1984// TI - Proposal for a common nomenclature for sequence ions in mass spectra of peptides JO - Biomed Mass Spectrom VL - 11 UR - https://doi.org/10.1002/bms.1200111109 DO - 10.1002/bms.1200111109 ID - Roepstorff1984 ER - TY - JOUR AU - Steen, H. AU - Küster, B. AU - Mann, M. PY - 2001 DA - 2001// TI - Quadrupole time-of-flight versus triplequadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning JO - J Mass Spectrom VL - 36 UR - https://doi.org/10.1002/jms.174 DO - 10.1002/jms.174 ID - Steen2001 ER - TY - JOUR AU - Steen, H. AU - Mann, M. PY - 2002 DA - 2002// TI - A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode JO - J Am Soc Mass Spectrom VL - 13 UR - https://doi.org/10.1016/S1044-0305(02)00415-4 DO - 10.1016/S1044-0305(02)00415-4 ID - Steen2002 ER - TY - JOUR AU - McLachlin, D. T. AU - Chait, B. T. PY - 2003 DA - 2003// TI - Improved beta-elimination-based affinity purification strategy for enrichment of phosphopeptides JO - Anal Chem VL - 75 UR - https://doi.org/10.1021/ac034989u DO - 10.1021/ac034989u ID - McLachlin2003 ER - TY - JOUR AU - Poot, A. J. AU - Ruijter, E. AU - Nuijens, T. AU - Dirksen, E. H. AU - Heck, A. J. AU - Slijper, M. AU - Rijkers, D. T. AU - Liskamp, R. M. PY - 2006 DA - 2006// TI - Selective enrichment of Ser-/Thr-phosphorylated peptides in the presence of Ser-/Thr-glycosylated peptides JO - Proteomics VL - 6 UR - https://doi.org/10.1002/pmic.200600373 DO - 10.1002/pmic.200600373 ID - Poot2006 ER - TY - JOUR AU - Arrigoni, G. AU - Resjo, S. AU - Levander, F. AU - Nilsson, R. AU - Degerman, E. AU - Quadroni, M. AU - Pinna, L. A. AU - James, P. PY - 2006 DA - 2006// TI - Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis JO - Proteomics VL - 6 UR - https://doi.org/10.1002/pmic.200500073 DO - 10.1002/pmic.200500073 ID - Arrigoni2006 ER - TY - JOUR AU - Xia, Q. AU - Cheng, D. AU - Duong, D. M. AU - Gearing, M. AU - Lah, J. J. AU - Levey, A. I. AU - Peng, J. PY - 2008 DA - 2008// TI - Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry JO - J Proteome Res VL - 7 UR - https://doi.org/10.1021/pr8000496 DO - 10.1021/pr8000496 ID - Xia2008 ER - TY - JOUR AU - Bodenmiller, B. AU - Mueller, L. N. AU - Mueller, M. AU - Domon, B. AU - Aebersold, R. PY - 2007 DA - 2007// TI - Reproducible isolation of distinct, overlapping segments of the phosphoproteome JO - Nat Methods VL - 4 UR - https://doi.org/10.1038/nmeth1005 DO - 10.1038/nmeth1005 ID - Bodenmiller2007 ER - TY - JOUR AU - Tao, W. A. AU - Wollscheid, B. AU - O'Brien, R. AU - Eng, J. K. AU - Li, X. J. AU - Bodenmiller, B. AU - Watts, J. D. AU - Hood, L. AU - Aebersold, R. PY - 2005 DA - 2005// TI - Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry JO - Nat Methods VL - 2 UR - https://doi.org/10.1038/nmeth776 DO - 10.1038/nmeth776 ID - Tao2005 ER - TY - JOUR AU - López, E. AU - López, I. AU - Sequí, J. AU - Ferreira, A. PY - 2011 DA - 2011// TI - Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools JO - J Clin Bioinforma VL - 1 UR - https://doi.org/10.1186/2043-9113-1-16 DO - 10.1186/2043-9113-1-16 ID - López2011 ER - TY - JOUR AU - Huddleston, M. J. AU - Annan, R. S. AU - Bean, M. F. AU - Carr, S. A. PY - 1993 DA - 1993// TI - Selective detection of phosphopeptides in complex-mixtures by electrospray liquid-chromatography mass-spectrometry JO - J Am Soc Mass Spectrom VL - 4 UR - https://doi.org/10.1016/1044-0305(93)80049-5 DO - 10.1016/1044-0305(93)80049-5 ID - Huddleston1993 ER - TY - JOUR AU - DeGnore, J. P. AU - Qin, J. PY - 1998 DA - 1998// TI - Fragmentation of phosphopeptides in an ion trap mass spectrometer JO - J Am Soc Mass Spectrom VL - 9 UR - https://doi.org/10.1016/S1044-0305(98)00088-9 DO - 10.1016/S1044-0305(98)00088-9 ID - DeGnore1998 ER - TY - JOUR AU - Boersema, P. J. AU - Mohammed, S. AU - Heck, A. J. PY - 2009 DA - 2009// TI - Phosphopeptide fragmentation and analysis by mass spectrometry JO - J Mass Spectrom VL - 44 UR - https://doi.org/10.1002/jms.1599 DO - 10.1002/jms.1599 ID - Boersema2009 ER - TY - JOUR AU - Beausoleil, S. A. AU - Jedrychowski, M. AU - Schwartz, D. AU - Elias, J. E. AU - Villen, J. AU - Li, J. X. AU - Cohn, M. A. AU - Cantley, L. C. AU - Gygi, S. P. PY - 2004 DA - 2004// TI - Large-scale characterization of HeLa cell nuclear phosphoproteins JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0404720101 DO - 10.1073/pnas.0404720101 ID - Beausoleil2004 ER - TY - JOUR AU - Benschop, J. J. AU - Mohammed, S. AU - O'Flaherty, M. AU - Heck, A. J. R. AU - Slijper, M. AU - Menke, F. L. H. PY - 2007 DA - 2007// TI - Quantitative Phosphoproteomics of Early Elicitor Signalling in Arabidopsis JO - Mol Cell Proteomics VL - 6 UR - https://doi.org/10.1074/mcp.M600429-MCP200 DO - 10.1074/mcp.M600429-MCP200 ID - Benschop2007 ER - TY - JOUR AU - Schroeder, M. J. AU - Shabanowitz, J. AU - Schwartz, J. C. AU - Hunt, D. F. AU - Coon, J. J. PY - 2004 DA - 2004// TI - A Neutral Loss Activation Method for Improved Phosphopeptide Sequence Analysis by Quadrupole Ion Trap Mass Spectrometry JO - Anal Chem VL - 76 UR - https://doi.org/10.1021/ac0497104 DO - 10.1021/ac0497104 ID - Schroeder2004 ER - TY - JOUR AU - López, E. AU - López, I. AU - Ferreira, A. AU - Sequí, J. PY - 2011 DA - 2011// TI - Clinical and technical phosphoproteomic research JO - Proteome Sci VL - 9 UR - https://doi.org/10.1186/1477-5956-9-27 DO - 10.1186/1477-5956-9-27 ID - López2011 ER - TY - JOUR AU - Molina, H. AU - Horn, D. M. AU - Tang, N. AU - Mathivanan, S. AU - Pandey, A. PY - 2007 DA - 2007// TI - Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0611217104 DO - 10.1073/pnas.0611217104 ID - Molina2007 ER - TY - JOUR AU - Chi, A. AU - Huttenhower, C. AU - Geer, L. Y. AU - Coon, J. J. AU - Syka, J. E. P. AU - Bai, D. L. AU - Shabanowitz, J. AU - Burke, D. J. AU - Troyanskaya, O. G. AU - Hunt, D. F. PY - 2007 DA - 2007// TI - Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0607084104 DO - 10.1073/pnas.0607084104 ID - Chi2007 ER - TY - JOUR AU - Mohammed, S. AU - Lorenzen, K. AU - Kerkhoven, R. AU - Breukelen, B. v. AU - Vannini, A. AU - Cramer, P. AU - Heck, A. J. R. PY - 2008 DA - 2008// TI - Multiplexed Proteomics Mapping of Yeast RNA Polymerase II and III Allows Near-Complete Sequence Coverage and Reveals Several Novel Phosphorylation Sites JO - Anal Chem VL - 80 UR - https://doi.org/10.1021/ac7024283 DO - 10.1021/ac7024283 ID - Mohammed2008 ER - TY - JOUR AU - Sweet, S. M. M. AU - Bailey, C. M. AU - Cunningham, D. L. AU - Heath, J. K. AU - Cooper, H. J. PY - 2009 DA - 2009// TI - Large-scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry JO - Mol Cell Proteomics VL - 8 UR - https://doi.org/10.1074/mcp.M800451-MCP200 DO - 10.1074/mcp.M800451-MCP200 ID - Sweet2009 ER - TY - JOUR AU - Hassanein, M. AU - Rahman, J. S. AU - Chaurand, P. AU - Massion, P. P. PY - 2011 DA - 2011// TI - Advances in proteomic strategies toward the early detection of lung cancer JO - Proc Am Thorac Soc VL - 8 UR - https://doi.org/10.1513/pats.201012-069MS DO - 10.1513/pats.201012-069MS ID - Hassanein2011 ER - TY - JOUR AU - Anderson, L. PY - 2005 DA - 2005// TI - Candidate-based proteomics in the search for biomarkers of cardiovascular disease JO - J Physiol VL - 563 UR - https://doi.org/10.1113/jphysiol.2004.080473 DO - 10.1113/jphysiol.2004.080473 ID - Anderson2005 ER - TY - JOUR AU - Rifai, N. AU - Gillette, M. A. AU - Carr, S. A. PY - 2006 DA - 2006// TI - Protein biomarker discovery and validation: the long and uncertain path to clinical utility JO - Nat Biotechnol VL - 24 UR - https://doi.org/10.1038/nbt1235 DO - 10.1038/nbt1235 ID - Rifai2006 ER - TY - JOUR AU - García-Foncillas, J. AU - Bandrés, E. AU - Zárate, R. AU - Remírez, N. PY - 2006 DA - 2006// TI - Proteomic analysis in cancer research: potential application in clinical use JO - Clin Transl Oncol VL - 8 UR - https://doi.org/10.1007/BF02664935 DO - 10.1007/BF02664935 ID - García-Foncillas2006 ER - TY - JOUR AU - Bouchal, P. AU - Roumeliotis, T. AU - Hrstka, R. AU - Nenutil, R. AU - Vojtesek, B. AU - Garbis, S. D. PY - 2009 DA - 2009// TI - Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis JO - J Proteome Res VL - 8 UR - https://doi.org/10.1021/pr800622b DO - 10.1021/pr800622b ID - Bouchal2009 ER - TY - JOUR AU - Wiener, M. C. AU - Sachs, J. R. AU - Deyanova, E. G. AU - Yates, N. A. PY - 2004 DA - 2004// TI - Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures JO - Anal Chem VL - 76 UR - https://doi.org/10.1021/ac0493875 DO - 10.1021/ac0493875 ID - Wiener2004 ER - TY - JOUR AU - Geiger, T. AU - Cox, J. AU - Ostasiewicz, P. AU - Wisniewski, J. R. AU - Mann, M. PY - 2010 DA - 2010// TI - Super-SILAC mix for quantitative proteomics of human tumor tissue JO - Nat Methods VL - 7 UR - https://doi.org/10.1038/nmeth.1446 DO - 10.1038/nmeth.1446 ID - Geiger2010 ER - TY - JOUR AU - Anderson, L. AU - Hunter, C. L. PY - 2006 DA - 2006// TI - Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins JO - Mol Cell Proteomics VL - 5 UR - https://doi.org/10.1074/mcp.M500331-MCP200 DO - 10.1074/mcp.M500331-MCP200 ID - Anderson2006 ER - TY - JOUR AU - Wang, H. AU - Wong, C. H. AU - Chin, A. AU - Kennedy, J. AU - Zhang, Q. AU - Hanash, S. PY - 2009 DA - 2009// TI - Quantitative serum proteomics using dual stable isotope coding and nano LC-MS/MSMS JO - J Proteome Res VL - 8 UR - https://doi.org/10.1021/pr900158n DO - 10.1021/pr900158n ID - Wang2009 ER - TY - JOUR AU - Lee, J. AU - Soper, S. A. AU - Murray, K. K. PY - 2009 DA - 2009// TI - Microfluidic chips for mass spectrometry-based proteomics JO - J Mass Spectrom VL - 44 UR - https://doi.org/10.1002/jms.1585 DO - 10.1002/jms.1585 ID - Lee2009 ER - TY - JOUR AU - Pierobon, M. AU - Calvert, V. AU - Belluco, C. AU - Garaci, E. AU - Deng, J. AU - Lise, M. AU - Nitti, D. AU - Mammano, E. AU - De Marchi, F. AU - Liotta, L. AU - Petricoin, E. PY - 2009 DA - 2009// TI - Multiplexed cell signalling analysis of metastatic and nonmetastatic colorectal cancer reveals COX2-EGFR signalling activation as a potential prognostic pathway biomarker JO - Clin Colorectal Cancer VL - 8 UR - https://doi.org/10.3816/CCC.2009.n.018 DO - 10.3816/CCC.2009.n.018 ID - Pierobon2009 ER - TY - JOUR AU - Ramachandran, N. AU - Raphael, J. V. AU - Hainsworth, E. AU - Demirkan, G. AU - Fuentes, M. G. AU - Rolfs, A. AU - Hu, Y. AU - LaBaer, J. PY - 2008 DA - 2008// TI - Next-generation high-density self-assembling functional protein arrays JO - Nat Methods VL - 5 UR - https://doi.org/10.1038/nmeth.1210 DO - 10.1038/nmeth.1210 ID - Ramachandran2008 ER - TY - JOUR AU - Beirne, P. AU - Pantelidis, P. AU - Charles, P. AU - Wells, A. U. AU - Abraham, D. J. AU - Denton, C. P. AU - Welsh, K. I. AU - Shah, P. L. AU - du Bois, R. M. AU - Kelleher, P. PY - 2009 DA - 2009// TI - Multiplex immune serum biomarker profiling in sarcoidosis and systemic sclerosis JO - Eur Respir J VL - 34 UR - https://doi.org/10.1183/09031936.00028209 DO - 10.1183/09031936.00028209 ID - Beirne2009 ER - TY - JOUR AU - Kelleher, M. T. AU - Fruhwirth, G. AU - Patel, G. AU - Ofo, E. AU - Festy, F. AU - Barber, P. R. AU - Ameer-Beg, S. M. AU - Vojnovic, B. AU - Gillett, C. AU - Coolen, A. AU - Kéri, G. AU - Ellis, P. A. AU - Ng, T. PY - 2009 DA - 2009// TI - The potential of optical proteomic technologies to individualize prognosis and guide rational treatment for cancer patients JO - Target Oncol VL - 4 UR - https://doi.org/10.1007/s11523-009-0116-y DO - 10.1007/s11523-009-0116-y ID - Kelleher2009 ER - TY - JOUR AU - Wang, P. AU - Whiteaker, J. R. AU - Paulovich, A. G. PY - 2009 DA - 2009// TI - The evolving role of mass spectrometry in cancer biomarker discovery JO - Cancer Biol Ther VL - 8 UR - https://doi.org/10.4161/cbt.8.12.8634 DO - 10.4161/cbt.8.12.8634 ID - Wang2009 ER - TY - JOUR AU - Whiteaker, J. R. AU - Zhang, H. AU - Eng, J. K. AU - Fang, R. AU - Piening, B. D. AU - Feng, L. C. AU - Lorentzen, T. D. AU - Schoenherr, R. M. AU - Keane, J. F. AU - Holzman, T. AU - Fitzgibbon, M. AU - Lin, C. AU - Zhang, H. AU - Cooke, K. AU - Liu, T. AU - Camp, D. G. AU - Anderson, L. AU - Watts, J. AU - Smith, R. D. AU - McIntosh, M. W. AU - Paulovich, A. G. PY - 2007 DA - 2007// TI - Head-to-head comparison of serum fractionation techniques JO - J Proteome Res VL - 6 UR - https://doi.org/10.1021/pr0604920 DO - 10.1021/pr0604920 ID - Whiteaker2007 ER - TY - JOUR AU - Ernoult, E. AU - Bourreau, A. AU - Gamelin, E. AU - Guette, C. PY - 2010 DA - 2010// TI - A proteomic approach for plasma biomarker discovery with iTRAQ labeling and OFFGEL fractionation JO - J Biomed Biotechnol VL - 2010 UR - https://doi.org/10.1155/2010/927917 DO - 10.1155/2010/927917 ID - Ernoult2010 ER - TY - JOUR AU - Nirmalan, N. J. AU - Hughes, C. AU - Peng, J. AU - McKenna, T. AU - Langridge, J. AU - Cairns, D. A. AU - Harnden, P. AU - Selby, P. J. AU - Banks, R. E. PY - 2010 DA - 2010// TI - Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations JO - J Proteome Res VL - 10 UR - https://doi.org/10.1021/pr100812d DO - 10.1021/pr100812d ID - Nirmalan2010 ER - TY - JOUR AU - Krishhan, V. V. AU - Khan, I. H. AU - Luciw, P. A. PY - 2009 DA - 2009// TI - Multiplexed microbead immunoassays by flow cytometry for molecular profiling: basic concepts and proteomics applications JO - Crit Rev Biotechnol VL - 29 UR - https://doi.org/10.1080/07388550802688847 DO - 10.1080/07388550802688847 ID - Krishhan2009 ER - TY - JOUR AU - Cha, S. AU - Imielinski, M. B. AU - Rejtar, T. AU - Richardson, E. A. AU - Thakur, D. AU - Sgroi, D. C. AU - Karger, B. L. PY - 2010 DA - 2010// TI - In situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection: annotation by protein set enrichment analysis and gene ontology JO - Mol Cell Proteomics VL - 9 UR - https://doi.org/10.1074/mcp.M110.000398 DO - 10.1074/mcp.M110.000398 ID - Cha2010 ER - TY - JOUR AU - Anderson, K. S. AU - Sibani, S. AU - Wallstrom, G. AU - Qiu, J. AU - Mendoza, E. A. AU - Raphael, J. AU - Hainsworth, E. AU - Montor, W. R. AU - Wong, J. AU - Park, J. G. AU - Lokko, N. AU - Logvinenko, T. AU - Ramachandran, N. AU - Godwin, A. K. AU - Marks, J. AU - Engstrom, P. AU - Labaer, J. PY - 2011 DA - 2011// TI - Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer JO - J Proteome Res VL - 10 UR - https://doi.org/10.1021/pr100686b DO - 10.1021/pr100686b ID - Anderson2011 ER - TY - JOUR AU - Bateman, N. W. AU - Sun, M. AU - Hood, B. L. AU - Flint, M. S. AU - Conrads, T. P. PY - 2010 DA - 2010// TI - Defining central themes in breast cancer biology by differential proteomics: conserved regulation of cell spreading and focal adhesion kinase JO - J Proteome Res VL - 9 UR - https://doi.org/10.1021/pr100580e DO - 10.1021/pr100580e ID - Bateman2010 ER - TY - JOUR AU - Kristiansen, T. Z. AU - Harsha, H. C. AU - Grønborg, M. AU - Maitra, A. AU - Pandey, A. PY - 2008 DA - 2008// TI - Differential membrane proteomics using 18O-labeling to identify biomarkers for cholangiocarcinoma JO - J Proteome Res VL - 7 UR - https://doi.org/10.1021/pr800215n DO - 10.1021/pr800215n ID - Kristiansen2008 ER - TY - JOUR AU - An, H. J. AU - Lebrilla, C. B. PY - 2010 DA - 2010// TI - A glycomics approach to the discovery of potential cancer biomarkers JO - Methods Mol Biol VL - 600 UR - https://doi.org/10.1007/978-1-60761-454-8_14 DO - 10.1007/978-1-60761-454-8_14 ID - An2010 ER - TY - JOUR AU - Choudhary, C. AU - Mann, M. PY - 2010 DA - 2010// TI - Decoding signalling networks by mass spectrometry-based proteomics JO - Nat Rev Mol Cell Biol VL - 11 UR - https://doi.org/10.1038/nrm2900 DO - 10.1038/nrm2900 ID - Choudhary2010 ER - TY - JOUR AU - Madian, A. G. AU - Regnier, F. E. PY - 2010 DA - 2010// TI - Profiling carbonylated proteins in human plasma JO - J Proteome Res VL - 9 UR - https://doi.org/10.1021/pr900890k DO - 10.1021/pr900890k ID - Madian2010 ER - TY - JOUR AU - Iwabata, H. AU - Yoshida, M. AU - Komatsu, Y. PY - 2005 DA - 2005// TI - Proteomic analysis of organ-specific post-translational lysine-acetylation and -methylation in mice by use of anti-acetyllysine and -methyllysine mouse monoclonal antibodies JO - Proteomics VL - 5 UR - https://doi.org/10.1002/pmic.200500042 DO - 10.1002/pmic.200500042 ID - Iwabata2005 ER - TY - JOUR AU - Ceroni, A. AU - Sibani, S. AU - Baiker, A. AU - Pothineni, V. R. AU - Bailer, S. M. AU - LaBaer, J. AU - Haas, J. AU - Campbell, C. J. PY - 2010 DA - 2010// TI - Systematic analysis of the IgG antibody immune response against varicella zoster virus (VZV) using a self-assembled protein microarray JO - Mol Biosyst VL - 6 UR - https://doi.org/10.1039/c003798b DO - 10.1039/c003798b ID - Ceroni2010 ER - TY - JOUR AU - Wong, J. AU - Sibani, S. AU - Lokko, N. N. AU - LaBaer, J. AU - Anderson, K. S. PY - 2009 DA - 2009// TI - Rapid detection of antibodies in sera using multiplexed self-assembling bead arrays JO - J Immunol Methods VL - 350 UR - https://doi.org/10.1016/j.jim.2009.08.013 DO - 10.1016/j.jim.2009.08.013 ID - Wong2009 ER - TY - JOUR AU - McDonnell, L. A. AU - Corthals, G. L. AU - Willems, S. M. AU - van Remoortere, A. AU - van Zeijl, R. J. AU - Deelder, A. M. PY - 2010 DA - 2010// TI - Peptide and protein imaging mass spectrometry in cancer research JO - J Proteomics VL - 73 UR - https://doi.org/10.1016/j.jprot.2010.05.007 DO - 10.1016/j.jprot.2010.05.007 ID - McDonnell2010 ER - TY - JOUR AU - Seeley, E. H. AU - Caprioli, R. M. PY - 2011 DA - 2011// TI - MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives JO - Trends Biotechnol VL - 29 UR - https://doi.org/10.1016/j.tibtech.2010.12.002 DO - 10.1016/j.tibtech.2010.12.002 ID - Seeley2011 ER - TY - JOUR AU - Hays, J. L. AU - Kim, G. AU - Giuroiu, I. AU - Kohn, E. C. PY - 2010 DA - 2010// TI - Proteomics and ovarian cancer: integrating proteomics information into clinical care JO - J Proteomics VL - 73 UR - https://doi.org/10.1016/j.jprot.2010.05.013 DO - 10.1016/j.jprot.2010.05.013 ID - Hays2010 ER -