Unique expression features of cancer-type organic anion transporting polypeptide 1B3 mRNA expression in human colon and lung cancers
© Sun et al.; licensee Springer. 2014
Received: 17 May 2014
Accepted: 14 October 2014
Published: 18 November 2014
We have previously identified the cancer-type organic anion transporting polypeptide 1B3 (Ct-OATP1B3) mRNA in several human colon and lung cancer tissues. Ct-OATP1B3 is a variant of the liver-type OATP1B3 (Lt-OATP1B3) mRNA, which is a hepatocyte plasma membrane transporter with broad substrate specificity. However, in cancer tissues, both the detailed characteristics of Ct-OATP1B3 mRNA expression and its biological functions remain unclear. With this point in mind, we sought to characterize Ct-OATP1B3 mRNA expression in colon and lung cancer tissues. In addition, we attempted to obtain functional implication of Ct-OATP1B3 in cancer cells.
Matched pairs of cancer and normal tissues were collected from 39 colon cancer and 28 lung cancer patients. The OATP1B3 mRNA expression levels in each of these tissues were separately determined by quantitative real-time polymerase chain reaction. Mann-Whitney U test and Fisher’s exact test were used in statistical analysis. The Ct-OATP1B3 functional expression in colon cancer cells was then examined by Western blotting and transport analyses.
Ct-OATP1B3 mRNA, but not Lt-OATP1B3 mRNA, was abundantly expressed in colon cancer tissues at a higher detection frequency (87.2%) than that of the adjacent normal tissues (2.6%). Furthermore, it was found that Ct-OATP1B3 mRNA expression was often detected in early colon cancer stages (88.9%, n = 18), and that its expression was associated with well-differentiated colon cancer statuses. On the other hand, Ct-OATP1B3 mRNA also showed a predominant and cancer-associated expression profile in lung tissues, although at frequencies and expression levels that were lower than those obtained from colon cancer. As for attempts to clarify the Ct-OATP1B3 functions, neither protein expression nor transport activity could be observed in any of the cell lines examined.
Based on the unique characteristics of the Ct-OATP1B3 mRNA expression profile identified in this study, Ct-OATP1B3 mRNA can be expected to become a biomarker candidate for use in colon (and lung) cancer diagnosis. Simultaneously, our results advance the possibility that Ct-OATP1B3 might play yet unidentified roles, in addition to transporter function, in cancer cell biology.
KeywordsOATP1B3 SLCO1B3 Colon cancer Lung cancer Cancer biomarker Cancer-specific expression Transporter
It has been acknowledged that early detection and appropriate treatment are essential for overcoming the high mortality and morbidity of cancer, and recent advances have provided excellent results showing that utilization of cancer-associated molecules in cancer diagnosis and cancer therapy can contribute significantly to the development of more sensitive and accurate detection methods, as well as to the improvement of treatment outcomes in various types of cancer. As part of these extensive ongoing research efforts aimed at identifying molecules closely associated with cancer, the specific aberrant mRNA products found in cancer cells have attracted significant levels of attention -. Recent findings have shown that those aberrant gene products are among the hallmarks of cancer, and that they often play a role in an oncogenic pathway, as exemplified by the association of the human epidermal growth factor receptor 2 splicing variant with breast cancer cell invasion and trastuzumab resistance . Thus, the characterizations of cancer-associated alternative mRNA products offer clear opportunities not only for development of diagnostic, prognostic, and therapeutic methods for cancer treatment, but also for gaining new insights into cancer biology.
Recently, we have made our first report on the identification of the cancer-type organic anion transporting polypeptide 1B3 (Ct-OATP1B3, [GenBank: NM_019844 (for SLCO1B3, gene symbol) and GenBank: AB669023 (for the alternative region)] in human colon and lung cancers , and other research groups have subsequently confirmed its existence in colon and pancreas cancers ,. Ct-OATP1B3 is an mRNA variant of the liver-specific OATP1B3 (which is hereafter referred to as the liver-type OATP1B3, Lt-OATP1B3) that mediates cellular uptake of a variety of endogenous compounds (e.g., cholecystokinin-octapeptide sulfated, CCK-8, or estradiol-17β-D-glucuronide, E2G), as well as drugs (e.g., paclitaxel or imatinib) at the basolateral membrane of hepatocytes ,. Previously, the detection of OATP1B3 (either or both Ct- and Lt-OATP1B3) has been reported in various cancer tissues, and it had been presumed that the mRNA was identical to Lt-OATP1B3 -. However, in contrast with this presumption, our investigations, along with others, have revealed that Ct-OATP1B3 mRNA expression is strongly associated with cancerous colon and lung tissues, but not with matched normal tissues or hepatocytes, and that Ct-OATP1B3 mRNA is expressed predominantly over Lt-OATP1B3 mRNA in these cancer tissues -. Therefore, those findings have shown that Ct-OATP1B3, but not Lt-OATP1B3, is a primary mRNA isoform, at least in these cancer tissues, which opens up the possibility of it being an intriguing cancer-associated molecule that can be used in the development of cancer biomarkers or therapeutic targets. Nevertheless, our current understanding of Ct-OATP1B3 mRNA expression profile in cancer tissues remains premature due to a small number of cancer tissues examined to date. Therefore, step-by-step characterization of Ct-OATP1B3 mRNA expression using a larger cohort will be required in order to validate and increase the feasibility of its clinical application.
Based on all above-mentioned circumstances, this study aimed at characterizing the Ct-OATP1B3 mRNA expression profile using a larger number of colon and lung cancer tissue specimens, while simultaneously exploring its application potential as a cancer biomarker. Furthermore, we report on our attempt to identify a transporter-like entity derived from Ct-OATP1B3 mRNA.
Demographic and clinical characteristics of colon cancer patients
N (total = 39)
Age at surgery (year)
Unknown or unclassified
Demographic and clinical characteristics of lung cancer patients
N (total = 28)
Age at surgery
Squamous cell carcinoma
Small cell carcinoma
Large cell carcinoma
The tumor stages of the colon and lung cancer patients were determined using the Union for International Cancer Control (UICC) tumor-node-metastasis (TNM) classification system. The differentiation status of colon cancer tissues was determined by pathological examination.
Cells and cell culture
LS180 and HCT116 (colon cancer) cells were obtained from DS Pharma Biomedical (Osaka, Japan) and Dr. B. Vogelstein (Johns Hopkins University, Baltimore, MD), respectively.
LS180 cells were cultured in Eagle's Minimum Essential Medium (Wako, Osaka, Japan). HCT116 cells were maintained in Dulbecco's Modified Eagle's Medium (Wako). All culture mediums were supplemented with 10% (v/v) heat-inactivated fetal bovine serum and antibiotics. The cells were grown at 37°C with 5% CO2.
Total RNA isolation and cDNA synthesis
Total RNA isolation from the human tissues and cells was performed using an ISOGEN II (NipponGene, Tokyo, Japan) according to the manufacturer’s protocol. cDNA synthesis from extracted RNA (1 μg) was performed using random hexamers as described previously .
Quantitative real-time polymerase chain reaction (qPCR)
qPCR was performed using the methods described in our previous report . Briefly, a SYBR green-based method was used for Lt-OATP1B3 mRNA expression quantification with the primer set (5’-AACAGCAGAGTCAGCATCTTCAG-3’ and 5’-AACATCTTGAATCCATTGCAGC-3’). Ct-OATP1B3 mRNA expression level was determined using a fluorescent probe-based method with the primer set (5’-TTGGCTTGGGCTCAGAGA-3’ and 5’-TGCCAAGAACATCTGCTAGTTT-3’), and universal probe #59 (Roche, Basel, Switzerland). The cDNA standard curve for each OATP1B3 mRNA was synthesized from each OATP1B3 mRNA at different copy numbers (from 103 to 108 copies for Ct-OATP1B3, and from 103 to 106 copies for Lt-OATP1B3). Each OATP1B3 expression level (copies/ng total RNA) in colon tissues, lung tissues, and cancer cell lines was calculated using its corresponding standard curve based on the condition that the mRNA expression level below 103 copies/ng total RNA, which was regarded as the level below the quantification limit (QL), the qPCR Ct-value of which was over 35. The mRNA expression levels over QL were regarded as positive expression (or positive patients), whereas those under the QL were regarded as negative expression (or negative patients).
The total OATP1B3 mRNA (Ct- plus Lt-OATP1B3) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) mRNA levels were respectively determined using universal probe #59 with the primer set (5’-CGGCCTAACCTTGACCTATG-`3 and 5’-TGAGTTGCAATAAGAAAGTGGTACA-3’), and probe #60 with the primer set (5’-AGCCACATCGCTCAGACAC-`3 and 5’-GCCCAATACGACCAAATCC-3’). Data were calculated using the delta-delta-Ct method, where the GAPDH mRNA levels were used as a normalization control.
Western blot analysis
Whole cell lysates were prepared from each cancer cell line using the lysis buffer or the Tris/Sucrose/EDTA buffer. The soluble membrane fractions were prepared from the whole cell lysates. Briefly, after centrifugation at 1,000 × g for 10 min, the supernatant was ultracentrifuged at 100,000 × g for 45 min. Then, the soluble membrane fractions were collected by dissolving the precipitates with the Tris/Sucrose/EDTA buffer supplemented with 0.8% (v/v) Nonidet P-40, 0.4% deoxycholic acid, and 0.08% sodium dodecyl sulfate (SDS), followed by a second ultracentrifugation under the same conditions. Using the same procedure, the soluble membrane fraction of human liver tissue was prepared.
The proteins were separated by SDS-polyacrylamide gel electrophoresis, and then transferred onto a polyvinylidene difluoride membrane. The membrane was blocked with 5% skim milk for one hour at room temperature. Affinity purified rabbit polyclonal anti-OATP1B3 antibodies, which recognize the C-terminal region of Lt-OATP1B3, were used as the primary antibodies (1,000-fold dilution, HPA004943, Sigma, St. Louis, MO). Anti-Na+/K+ ATPase (1,000-fold dilution, Sigma) and anti-β-actin (500-fold dilution, Sigma) were also used. Immunocomplexes were detected with ECL Western blotting detection reagents (GE Healthcare, Giles, UK).
[3H]-CCK-8 and [3H]-E2G were obtained from PerkinElmer (Boston, MA), while non-radiolabeled CCK-8 and E2G were purchased from the Peptide Institute (Osaka, Japan) and Sigma, respectively. The transport assay was performed using LS180 and HCT116 cells based essentially on the previously described method . Final concentrations of CCK-8 and E2G were 1 μM and 0.5 μM, respectively. The transport activity for each substrate was determined within a linear range (5 min). In the inhibition analysis, bromosulfophthalein (BSP, Sigma) (100 μM) was used.
Mann-Whitney U test was used to determine differences of mRNA expression levels between two groups. Fisher’s exact test was used to determine the univariate relationship of the frequency of Ct-OATP1B3 or Lt-OATP1B3 mRNA expression between normal and cancer tissues. In all of the comparative analyses, only the positively detected expression data were used. All statistical analyses were performed using the Statcel software (OMS Publishing Inc., Tokyo, Japan).
Detailed development methods for the Ct-OATP1B3-C and Ct-OATP1B3-v1 expression plasmids, development of human embryonic kidney (HEK) 293 cells transiently or stably expressing each OATP1B3 isoform, as well as anti-OATP1B3 rabbit serum preparation, are described in Additional file 8 (supplemental materials and methods). Experimental procedures for the Lt-OATP1B3 expression plasmid and immunocytochemistry were described in the previous report .
Expression profile of each OATP1B3 mRNA isoform in human colon cancer
Ct-OATP1B3 and Lt-OATP1B3 mRNA levels in colon tissues and pooled human hepatocytes
Median value (25-75thpercentile)(×103copies/ng total RNA)
56.9 ± 2.5d
When the Ct- and Lt-OATP1B3 mRNA levels in cancer tissues were compared, the median value of Ct-OATP1B3 mRNA levels in cancer tissues was 12.2-fold higher than that of Lt-OATP1B3 mRNA levels (19.5 × 103 vs. 1.6 × 103 copies/ng total RNA, P = 2.9 × 10-6) (Figure 2). In addition, Ct-OATP1B3 mRNA levels were also higher than Lt-OATP1B3 mRNA levels in individual cancer specimens (Additional file 2: Figure S2A).
It should be noted that the similar Ct- and Lt-OATP1B3 mRNA expression results were obtained using a ΔΔCt-method with the GAPDH mRNA level used as a normalization control (data not shown).
Taken together, our data showed that Ct-OATP1B3 mRNA was expressed in a cancer tissue-specific manner, and that its mRNA expression was predominant over Lt-OATP1B3 mRNA expression in colon cancer tissues.
Associations of Ct-OATP1B3 mRNA levels in colon cancer tissues with clinico-pathological variables
Ct-OATP1B3 mRNA levels in early and advanced stages of colon cancer tissues
Gene expression frequency
Gene expression levelsa
% (n, positive/total)
Median value (25-75thpercentile)
Early (0, I, and II)
88.9 (1/1, 2/2, and 13/15)
Advanced (III and IV)
93.8 (12/12 and 3/4)
Although the association of the Ct-OATP1B3 mRNA levels with other factors (age, sex and tumor location) was also examined, no statistically significant correlation could be found (data not shown).
Expression profile of each OATP1B3 mRNA isoform in human lung cancer
Regarding Lt-OATP1B3 mRNA expression, its positive frequencies in cancer and normal lung tissues were 7.1% (2/28) and 3.6% (1/28) (Figure 4), and the Lt-OATP1B3 mRNA level was lower than the Ct-OATP1B3 mRNA level in each matched pair (Additional file 2: Figure S2B).
Again, the similar Ct- and Lt-OATP1B3 mRNA expression results were obtained using a ΔΔCt-method with the GAPDH mRNA level as a normalization control (data not shown).
Comparison of Ct-OATP1B3 mRNA levels between colon and lung cancer
Functional expression analysis of endogenous Ct-OATP1B3 in colon cancer cell lines
Subsequently, endogenous Ct-OATP1B3 protein expression and functional analysis were performed by Western blotting and transport assays. Despite high Ct-OATP1B3 mRNA expression levels in colon cancer cells, its protein expression was not detected in the soluble membrane fraction of such cells when using either anti-OATP1B3 antibodies (which was obtained from Sigma) or anti-OATP1B3 rabbit serum (which was developed in this study) (Figure 6 and Additional file 3: Figure S3). Na+/K+ ATPase, which is a plasma membrane marker protein, was detected in all samples. Considering the possibility that Ct-OATP1B3 could be localized somewhere within intracellular fractions, the same analysis was also performed using whole cell lysates. However, no Ct-OATP1B3 protein expression was detected in any of those cells (Additional file 4: Figure S4). Consistently, CCK-8 transport activity was not detected in colon cancer cells, nor was this activity inhibited by BSP, which is a known OATP1B3 inhibitor (Figure 6C). Similar results were obtained from transport assay using E2G as a substrate (data not shown).
Ct-OATP1B3 functional expression analysis in cells transfected with each Ct-OATP1B3 isoform expression plasmid
We further examined the functional expression of Ct-OATP1B3 using HCT116 cells transiently expressing each OATP1B3 isoform. The immunocytochemistry and transport assay results did not show any Ct-OATP1B3 protein expression or CCK-8 uptake activity in HCT116 cells transiently transfected with each Ct-OATP1B3 isoform (Additional file 5: Figure S5). However, Lt-OATP1B3 protein expression, as well as its transport activity, was clearly detected in the same experimental condition.
Similar results were also obtained from HEK293 cells stably expressing an OATP1B3 isoform (Additional file 6: Figure S6). As expected, Lt-OATP1B3 expression and function were clearly detected in HEK293 cells stably expressing Lt-OATP1B3. However, despite comparable mRNA levels among the cells, the results of Western blotting and transport assays failed to show functional Ct-OATP1B3 expression in any HEK293 cells expressing either Ct-OATP1B3-C or CT-OATP1B3-v1.
In agreement with our previous study, the results of the present study have shown that, even when using a larger number of the matched-pair tissue specimens, the Ct-OATP1B3 mRNA expression level in individual cancer tissue is always higher than the level in matched normal tissues, and is always predominant over the Lt-OATP1B3 mRNA level in each cancer tissue. These findings can be regarded as supporting evidence that Ct-OATP1B3 is the bona fide OATP1B3 mRNA isoform expressed in human colon and lung cancer. Thus, special attention should be paid to Ct-OATP1B3 expression (rather than Lt-OATP1B3) in future studies on cancer-associated OATP1B3. Furthermore, due to the high mRNA sequence similarities between the two isoforms, an elaborative experimental design is strongly recommended for such studies.
Cancer-specific RNA, DNA modification, or secreted molecules have been used as cancer biomarkers, such as carcinoembryonic antigen (CEA) and carbohydrate antigen 19–9 (CA19-9) in colon cancer -. In addition, numerous studies have been conducted to identify new clinically useful cancer biomarkers, as exemplified by Kallikrein-related peptidase 10 (KLK10) mRNA, which shows a cancer-specific profile . Accordingly, the high positive rate (87.2%) of Ct-OATP1B3 mRNA expression in colon cancer tissues, along with its high T/N ratio, motivates us to evaluate it as a possible colon cancer biomarker candidate. Cancer biomarkers should possess sufficient and appropriate sensitivity and specificity that allows them to fulfill their roles in a given cancer therapy (cancer detection, metastasis or recurrence risk assessment, or response prediction). Therefore, in order to evaluate those properties, the area under the receiver operating characteristic curve analysis has been widely used (higher score is preferable with the maximum value = 1) . A preliminary examination shows that the value of Ct-OATP1B3 mRNA is 0.93 for colon cancer diagnosis (Additional file 7: Figure S7). This value is comparable to that of serum CEA (0.86) or KLK10 mRNA (0.89) and higher than that of CA19-9 (0.58) ,, suggesting that Ct-OATP1B3 mRNA may possess the clinically useful level of diagnostic power necessary to discriminate between cancer and normal colon tissues. In addition, the newly-identified clinico-pathological Ct-OATP1B3 mRNA expression features, which are its high rate of detection in early stages of colon cancer as well as its association with the well-differentiated cancer status, are considered noteworthy.
Based on the above considerations, it is reasonable to expect that Ct-OATP1B3 mRNA may be a highly promising candidate of colon cancer biomarker. However, we should reiterate the limitations of this study, which underscore the necessity of further investigations using an expanded cohort, various populations, and multicenter analyses in order to produce a comprehensive evaluation of its usefulness and restrictions. Elucidation of associations between Ct-OATP1B3 mRNA expression and prognostic values is another key issue that needs to be addressed (we were unable to pursue in this study due to use of recently obtained tissue specimens). Furthermore, it will be important to explore whether Ct-OATP1B3 mRNA can be detected in blood, because it has become evident that serum exosomes secreted from cancer cells contain cancer cell-derived molecules , such as the tumor-specific mRNA splicing variant detected in serum exosomes obtained from several glioblastoma patients .
Taken together, although extensive research efforts will be necessary before Ct-OATP1B3 mRNA can be established as a colon cancer biomarker, it is considered likely that such research will be worthwhile to promote in view of the urgent need for diagnostic tools in colon cancer, including the need for the development of a more reliable and less-invasive detection marker for patients in early stages of the disease. It has been acknowledged that examination of serum CEA and CA19-9 does not have sufficient capability for early identification of colon cancer due to their low abnormality rates in stage I (12-19% and 8%, respectively) and stage II patients (47-49% and 17%, respectively) ,. Therefore, once established, it is speculated that Ct-OATP1B3 mRNA, together with other markers and image diagnostic methods such as colonoscopy, computerized tomography, and magnetic resonance imaging, may improve the accuracy and sensitivity of current colon cancer screening, and may provide other important clinico-pathological information that ultimately contribute to reduction in the incidence of morbidity and mortality of the disease.
In addition to colon cancer, Ct-OATP1B3 mRNAs were also detected in about one third of lung cancer patients as well. This finding suggests that Ct-OATP1B3 mRNA may also be an indicator of lung cancer occurrence, although to a lesser degree. In line with the observations that Ct-OATP1B3 mRNA has been detected in other cancer types ,, it will be necessary to clarify Ct-OATP1B3 mRNA expression preference in various cancer types to expand its clinical potential.
Functions of genes that are overexpressed in a cancer-specific manner are often involved in oncogenic processes -. Therefore, it is rational to assume that association of Ct-OATP1B3 mRNA expression with well-differentiation cancer status, as well as differential expression levels between lung and colon cancer, have some links with certain cancer cell biological processes.
Based on the predicted transporter-like structure of Ct-OATP1B3 translation products, which are Ct-OATP1B3-C and Ct-OATP1B3-v1 (Figure 1), one of the plausible functions of Ct-OATP1B3 is hormone uptake into cancer cells, as has been reported with the OATP1A2 function in prostate cancer . The previous results provided by a cell-based exogenous Ct-OATP1B3-v1 transient expression system might also support this possibility ,. However, our results did not identify any functional expression of endogenous Ct-OATP1B3 in colon cancer cells, nor were we able to identify exogenous Ct-OATP1B3 function in HEK293 cells stably expressing Ct-OATP1B3-C or Ct-OATP1B3-v1. Thus, these results show apparent inconsistencies regarding the functional expression of Ct-OATP1B3. Because the experimental transport assay procedures employed in those studies are quite similar, the reason for the above-mentioned controversy is currently unclear. Therefore, further research aimed at providing convincing experimental evidence showing whether or not the Ct-OATP1B3 protein exists will be necessary to solve the above-mentioned arguments. However, in such future studies, we suggest taking into consideration the possibility that the translation efficiency of Ct-OATP1B3-v1 or Ct-OATP1B3-C might be very low. This is because the genomic DNA sequence around the Ct-OATP1B3-v1 start codon shows much less homology to the Kozak sequence (Figure 1B) , and because Ct-OATP1B3-C has a long 5’-untranslated region.
Nevertheless, we believe it is important to publicize our unexpected results pointing out that the transport function may not be the major role of endogenous Ct-OATP1B3 in cancer cells. This is because the results provide, rather than exclude, additional possibilities relating to how Ct-OATP1B3 plays a functional role in cancer cell biology. Recently, it has been shown that long non-coding RNA can directly interact with proteins to promote cancer metastasis , while another report has shown that a short cell-penetrating peptide derived from the Wilm’s tumor protein 1 has inhibitory effects on cancer proliferation and clonogenic activity . In our previous report, the existence of Ct-OATP1B3-derived short peptides was suggested . Therefore, while it is already clear that Ct-OATP1B3 plays far-reaching roles in cancer cells, numerous in vivo as well as in vitro experiments still remain to be conducted. The results of these experiments can be expected to provide important clues that will help identifying the functions of Ct-OATP1B3 protein, peptides, or the mRNA itself in cancer cell biology.
Our results not only provide further evidence of the primary Ct-OATP1B3 mRNA expression profile in human colon and lung cancer, but also identify new clinico-pathological features of the Ct-OATP1B3 mRNA expression. Even though these results should be interpreted with caution due to several study limitations, it can nevertheless be said that Ct-OATP1B3 mRNA has the potential to become a promising biomarker candidate for colon (and lung) cancer diagnosis. On the other hand, our data suggests that, although existence of a transporter-like Ct-OATP1B3 protein cannot be fully excluded, it may not functionally active at detectable levels. This highlights the need to give serious consideration to any molecules potentially originating from the Ct-OATP1B3 gene in further investigations aimed at obtaining a more precise understanding of the roles played by Ct-OATP1B3 in cancer cells. We believe that such functional studies on Ct-OATP1B3 will provide new insights into cancer biology, while simultaneously enhancing translational research into its role as a cancer biomarker candidate.
YS, TF, and KC participated in the design of the study. YS, SI, MN, MH, and AK performed the experiments. OS, TK, SM and IY provided the research materials and analyzed the results. YS, TF, KK and KC analyzed the results and wrote the manuscript. All authors read and approved the final manuscript.
- Ct- and Lt-OATP1B3:
Cancer-type and liver-type organic anion transporting polypeptide 1B3, respectively
Glyceraldehyde 3-phosphate dehydrogenase
Fifty donor-pooled human hepatocytes
The quantification limit
Quantitative real-time polymerase chain reaction
Solute carrier organic anion transporter
- T/N ratio:
Tumor/normal expression ratio
We would like to thank Dr. B. Vogelstein (Johns Hopkins University, Baltimore, MD) who kindly provided the research materials. This work was supported by JSPS KAKENHI Grant Number 24590179.
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